View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20473_low_24 (Length: 369)
Name: NF20473_low_24
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20473_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 10591884 - 10592245
Alignment:
| Q |
1 |
taatctcctgtattatactattgtaaaccttattactaacatatccactaaatcatgcttaaatcataaggagtttatattttaaaagtcaaaagattga |
100 |
Q |
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| T |
10591884 |
taatctcctgtattatactattgtaaaccttattactaacatatccactaaatcatgcttaaatcataaggagtttatattttaaaagtcaaaagattga |
10591983 |
T |
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| Q |
101 |
gttcaaagtcagacagaagaaaatgtactatgttggtacaattttgaagatgtaaattattggtgatattttgatttgaagtatctttctattaaatttg |
200 |
Q |
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| T |
10591984 |
gttcaaagtcagacagaagaaaatgtactatgttggtacaattttgaagacgtaaattattggtgatattttgatttgaagtatctttctattaaatgtg |
10592083 |
T |
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| Q |
201 |
gatgttactagtttagcaacttgctattttctcaca-----------atgacctttttatgctgatatacctaattatcacatcacatgcatataaatag |
289 |
Q |
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| T |
10592084 |
gatgttactagtttagcaacttgctattttctcacaatgacctgtatatgacctttttatgctcatatacctaattatcacatcacatgcatataaatag |
10592183 |
T |
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| Q |
290 |
gaaactccaatatcttgtttcacttctctatagtacagtttgaaaattgaaagttgaagtat |
351 |
Q |
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| T |
10592184 |
gaaactccaatatcttgtttcacttctctatagtacagtttgaaaattgaaagttgaagtat |
10592245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 10429995 - 10429939
Alignment:
| Q |
91 |
aaaagattgagttcaaagtcagacagaagaaaatgtactatgttggtacaattttga |
147 |
Q |
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| T |
10429995 |
aaaagattgagttcaaaatcagacagaggacaaaatactatgttagtacagttttga |
10429939 |
T |
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