View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20473_low_25 (Length: 365)
Name: NF20473_low_25
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20473_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 349
Target Start/End: Complemental strand, 48654722 - 48654382
Alignment:
| Q |
13 |
aatatatagagaggaattgataatatatacttatgtgaaaggaataaatgtgaaatattggttgaggagtnnnnnnnn-gtaggacctaccgcgtcctct |
111 |
Q |
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| T |
48654722 |
aatatagagagaggaattgata---tatacttatgtgaaaggaataaatgtgaaatattggttgaggagtaaaaaaaaagtaggacctaccgcgtcctct |
48654626 |
T |
|
| Q |
112 |
tactaaatgcaccaccctgcctgtgactttagaagcataagtccatttgctactgcacactctttttacgctcatttcgatcaacacgtttagagctaag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48654625 |
tactaaatgcaccaccctgcctgtgactttagaagcataagtccatttgctactgcacactctttttacgctcatttcgatcaacacgtttagagctaag |
48654526 |
T |
|
| Q |
212 |
accttcattcaattcaaatt------caaaatccaagttattcacacacacgaaccatcatcatttataagcaagcacaacacaatgaattctccaatat |
305 |
Q |
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| T |
48654525 |
accttcattgaattcaaattcaaattcaaaatccaagttattcacacacacgaaccatcatcatttataagcaagcacaacacaatgaattctccaatat |
48654426 |
T |
|
| Q |
306 |
taattcaaattagctatacccacataaaacattattattattat |
349 |
Q |
| |
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| T |
48654425 |
taattcaaattagctatacccacataaaacattattattattat |
48654382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 145 - 266
Target Start/End: Complemental strand, 48646143 - 48646027
Alignment:
| Q |
145 |
agcataagtccatttgctactgcacactctttttacgctcatttcgatcaacacgtttagagctaagaccttcattcaattcaaattcaaaatccaagtt |
244 |
Q |
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| T |
48646143 |
agcataagttcatttgctactccacgctctttttacgctctatttgatcaacacgtttagagctaagaccttcattcaa-----aatcaaaatacaattt |
48646049 |
T |
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| Q |
245 |
attcacacacacgaaccatcat |
266 |
Q |
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||||||||||| || ||||||| |
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| T |
48646048 |
attcacacacaagagccatcat |
48646027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 190 - 346
Target Start/End: Complemental strand, 8146439 - 8146276
Alignment:
| Q |
190 |
gatcaacacgtttagagctaagaccttcattcaattcaaattcaaaatccaagttattcacacacacgaaccatcatc-----------atttataagca |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| ||| |
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| T |
8146439 |
gatcaacacgtttagagctaagaccttcattcaattcaaattcaaaatccaagttattcac--acacgagccatcatcatttggtgtttatttataggca |
8146342 |
T |
|
| Q |
279 |
agcacaacacaatgaattctccaatattaattcaaattagctatacccacataaaacattattattat |
346 |
Q |
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|
| T |
8146341 |
agcacaacacaatgaattctccaatattaattgaaattagc--tacccacataaaaatttattattat |
8146276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 194 - 346
Target Start/End: Complemental strand, 48570272 - 48570113
Alignment:
| Q |
194 |
aacacgtttagagctaagaccttcattcaattcaaattcaaaatccaagttattcacacacacgaaccatcatc-----------atttataagcaagca |
282 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| ||||||| |
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| T |
48570272 |
aacacgtttagagctaagaccttcattcaattcaaattcaaaatccaagttattcac--acacgagccatcatcatttggtgtttatttataggcaagca |
48570175 |
T |
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| Q |
283 |
caacacaatgaattctccaatattaattcaaattagctatacccacataaaacattattattat |
346 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||| |
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| T |
48570174 |
caacacaatgaattctccaatattaattgaaattagc--tacccacataaaaatttattattat |
48570113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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