View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20473_low_29 (Length: 308)
Name: NF20473_low_29
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20473_low_29 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 44 - 308
Target Start/End: Original strand, 47298431 - 47298695
Alignment:
| Q |
44 |
ggtataatcaactgggcctaattaagagactaaaacagatgcaaagcaacctaaggctaaataaaacagccgaaaataataacaacaaagaataggggct |
143 |
Q |
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| T |
47298431 |
ggtataatcaactgggcctaattaagagactaaaacagatgcaaagcagcctaaggctaaataaaacagccgaaaataataaaaacaaagaataggggct |
47298530 |
T |
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| Q |
144 |
gacagaattataatatgaaaacctatatactagttaatatatcacaataacaaacaggtctttcattataattatatagcacaaaagcccccaactttat |
243 |
Q |
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| T |
47298531 |
gacagaattataatatgaaaacctatatactagttaatatatcacaataacaaacaggtctttcattatcattatatagcacacaagcccccaactttat |
47298630 |
T |
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| Q |
244 |
ttaacagcaatcacgacattacaattttacaaactacaacaaactataaggtagacatcgcaaaa |
308 |
Q |
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| T |
47298631 |
ttaacagcaatcacgacagtacaattttacaaactacaacaaactataaggtagacatcgcaaaa |
47298695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 72 - 308
Target Start/End: Original strand, 47291856 - 47292088
Alignment:
| Q |
72 |
actaaaacagatgcaaagcaacctaaggctaaa-----taaaacagccgaaaataataacaacaaagaataggggctgacagaattataatatgaaaacc |
166 |
Q |
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| T |
47291856 |
actaaaacagatgcaaagcagcctaaggctaaattaaataaaacagctgataataataaaaacaaagaataggggctgatagaattataatattaaatcc |
47291955 |
T |
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| Q |
167 |
tatatactagttaatatatcacaataacaaacaggtctttcattataattatatagcacaaaagcccccaactttatttaacagcaatcacgacattaca |
266 |
Q |
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| T |
47291956 |
tagatactagttaatatatctcacaaac-aataggcctttcattatcattatatagcacacaagcccccaactttatttaacaggaatcacgaca----- |
47292049 |
T |
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| Q |
267 |
attttacaaactacaacaaactataaggtagacatcgcaaaa |
308 |
Q |
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| T |
47292050 |
---ttacaaactacaacaaactataaggtagacatcgcaaaa |
47292088 |
T |
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