View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20473_low_3 (Length: 602)
Name: NF20473_low_3
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20473_low_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 72 - 602
Target Start/End: Original strand, 9247739 - 9248269
Alignment:
| Q |
72 |
cctcgtgatcaatcaaggacaatctgtcattgcagccacacatctgacaaactaattttgtttcttcttatgttgcaaaatgcatgtaatgaaaaccttg |
171 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9247739 |
cctcatgatcaatcaaggacaatctgtcattgcagccacgcatctgacaaactaattttgtttcttcttatgttgcaaaatgcatgtaatgaaaaccttg |
9247838 |
T |
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| Q |
172 |
cattgtattttaagttggaattgcaaacattgtttttcggtaaccagattccaggtacaaactatctactgccgcttaacagcgtctgatctccgtttaa |
271 |
Q |
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| T |
9247839 |
cattgtattttaagttggaattgcaaacattgtttttcagtaaccagattccaggtacaaactatctactgccgcttaacagcgtctgatctccgtttaa |
9247938 |
T |
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| Q |
272 |
cagtgttttctataaataagagtcaggattttcacctctaaccactatcttaagttgtttgagttccttaccactcagatgaacttgtcgaaagaaatgc |
371 |
Q |
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| T |
9247939 |
cagtgttttctataaataagagtcaggattttcacctctaaccactatcttaagttgtttgagttccttaccactcagatgaacttgtcgaaagaaatgc |
9248038 |
T |
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| Q |
372 |
atgcatagtaatatactttcaattacataaatttaaccctgttaatatctacatcagcttaaccattccaccattttactgtaagtacaataaactatgg |
471 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9248039 |
atgcatagtaatatactttcaattacataaatttaaccctgttaatatctacatcagcttaaccattctaccattttactgtaagtacaataaactatgg |
9248138 |
T |
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| Q |
472 |
tatcaatcaaccactttatataatttcaaagaaatcattcattcataaagttaaataaatttgctgtgacaattaacactgagaagataaatgagaatct |
571 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9248139 |
tatcaatcaaccactttatataatttcaaagaaatcattcattcataaagttaaataaatttgctgtgacaattaacactgagaagataaatgagaatct |
9248238 |
T |
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| Q |
572 |
tctataccagagacacaaacaaacactaaac |
602 |
Q |
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| T |
9248239 |
tctataccagagacacaaacaaacactaaac |
9248269 |
T |
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