View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20473_low_31 (Length: 278)
Name: NF20473_low_31
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20473_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 15 - 264
Target Start/End: Complemental strand, 47988284 - 47988035
Alignment:
| Q |
15 |
caaaggttagtagtgcaacaaatacttgactttgagattacaacacgtcacaacatttatttttggtgaccaaccagcatcatctattagaaatatacaa |
114 |
Q |
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| T |
47988284 |
caaaggttagtagtgcaacaaatacttgactttgagattacaacacgtcacaacatttatttttggtgaccaaccagcatcatctattagaaatatacag |
47988185 |
T |
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| Q |
115 |
ctgctatgatatactacaactgaaacataataatataatagtaatatatcactcaaattgaagaagatcgacgttgcatatacacattgtgacatctaca |
214 |
Q |
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| T |
47988184 |
ctgctatgatatactgcaactgaaacataataatataatagtaatatatcactcaaattgaagaagatcgacgttgcatatacacattgtgacatctaca |
47988085 |
T |
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| Q |
215 |
tagtataaaaatgagtatcaaatcaaataccgaatgatatgtgtcatatt |
264 |
Q |
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| T |
47988084 |
tagtataaaaatcagtatcaaatcaaataccgaatgatatgtgccatatt |
47988035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 121
Target Start/End: Complemental strand, 47978158 - 47978111
Alignment:
| Q |
74 |
tttttggtgaccaaccagcatcatctattagaaatatacaactgctat |
121 |
Q |
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| T |
47978158 |
tttttggttaccaaccagcatcgtctattagaaataaacaactgctat |
47978111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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