View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20473_low_33 (Length: 267)
Name: NF20473_low_33
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20473_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 32 - 246
Target Start/End: Original strand, 10968633 - 10968847
Alignment:
| Q |
32 |
caaaggctgaacaaggtgattttggttgaggagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatc |
131 |
Q |
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| T |
10968633 |
caaaggctgaacaaggtgattttggttgacgagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatc |
10968732 |
T |
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| Q |
132 |
gaattaaggaattaatggactccgataaagggaaagagattaggaaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaag |
231 |
Q |
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| T |
10968733 |
gaattaaggaattaatggactccgataaagggaaagagattaggaaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaag |
10968832 |
T |
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| Q |
232 |
ttcacttgttgcttt |
246 |
Q |
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| T |
10968833 |
ttcacttgttgcttt |
10968847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 32 - 246
Target Start/End: Original strand, 10982583 - 10982797
Alignment:
| Q |
32 |
caaaggctgaacaaggtgattttggttgaggagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatc |
131 |
Q |
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| T |
10982583 |
caaaggctgaacaaggtgattttggttgaggagatgaaggttgctttggaattgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatc |
10982682 |
T |
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| Q |
132 |
gaattaaggaattaatggactccgataaagggaaagagattaggaaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaag |
231 |
Q |
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| T |
10982683 |
aaattaaggaattaatggactccgataaggggaaagagattagacaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaag |
10982782 |
T |
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| Q |
232 |
ttcacttgttgcttt |
246 |
Q |
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| T |
10982783 |
ttcccttgtcgcttt |
10982797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 11002813 - 11003023
Alignment:
| Q |
32 |
caaaggctgaacaaggtgattttggttgaggagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatc |
131 |
Q |
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|||||| ||||||| |||||||||||||||| |||||||| ||||||||||| || | |||||| | |||||||||||||||| ||||| ||||| |
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| T |
11002813 |
caaaggttgaacaaaatgattttggttgaggaaatgaaggtggctttggaactaaatgggtcaaaaaaagggtttgtgagtggaaatgagttgggggaga |
11002912 |
T |
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| Q |
132 |
gaattaaggaattaatggactccgataaagggaaagagattaggaaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaag |
231 |
Q |
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| T |
11002913 |
gagttaaggagttgatggaatcagaaaaagggaaagagattagagagacaattttgaagatgaaaacaagtgctaaggaggcaaaaggaggaggtggatc |
11003012 |
T |
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| Q |
232 |
ttcacttgttg |
242 |
Q |
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||| ||||||| |
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| T |
11003013 |
ttctcttgttg |
11003023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 242
Target Start/End: Original strand, 11079996 - 11080164
Alignment:
| Q |
74 |
gctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcgaattaaggaattaatggactccgataaagggaaagagatta |
173 |
Q |
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||||||||| |||| || |||||||| ||||||||||||| || ||||| ||||| || ||||||| || ||||| || || || ||||||||| ||| |
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| T |
11079996 |
gctttggaattgaatgagtcaaaagatgggtttgtgagtgaaaatgagttgggggagagagttaaggagttgatggaatcagaaaaggggaaagaggtta |
11080095 |
T |
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| Q |
174 |
ggaaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaagttcacttgttg |
242 |
Q |
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| T |
11080096 |
gagagacaattttgaagatgaaaataagtgctaaggaagcaagaggaggaggtggatcttctcttgttg |
11080164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 11019344 - 11019404
Alignment:
| Q |
182 |
attttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaagttcacttgttg |
242 |
Q |
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||||| || ||||||||||||||||| |||||||||| || ||||||| ||| ||||||| |
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| T |
11019344 |
attttgaaaatgaaaataagtgctaaggaggcaagaggaggaggtggatcttctcttgttg |
11019404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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