View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20473_low_36 (Length: 253)
Name: NF20473_low_36
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20473_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 33241500 - 33241735
Alignment:
| Q |
1 |
agcaaacttaatatttaaaatatgaaatctattgttacgactacaagtatcctccgtactctttcccttgagaaatatttgggttttcccatgatgcatg |
100 |
Q |
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| T |
33241500 |
agcaaacttaatatttaaaatatgagatctattgttacgactacaagtatcctccgtactctttcccttgagaaatatttgggttttcccatgatgcatg |
33241599 |
T |
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| Q |
101 |
gatgcctccaaaggagagattttgaa-ttttttgaggaaaacatatgccaacggttagcttcgcggcaacatcacctgttaaacaaagttggttgaatga |
199 |
Q |
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| T |
33241600 |
gaggcctccaaaggagagattttgaatttttttgaggaaaacataagccaacggttagcttcgtggcaacatcacctgttgaacaaagttggtcgaatga |
33241699 |
T |
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| Q |
200 |
ctttggttaaatctgtattaatttcaattccctatt |
235 |
Q |
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||||||||||||||||||||| ||| |||||||||| |
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| T |
33241700 |
ctttggttaaatctgtattaaattctattccctatt |
33241735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 33249421 - 33249656
Alignment:
| Q |
1 |
agcaaacttaatatttaaaatatgaaatctattgttacgactacaagtatcctccgtactctttcccttgagaaatatttgggttttcccatgatgcatg |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33249421 |
agcaaacttaatatttaaaatatgagatctattgttacgactacaagtatcctccgtactctttcccttgagaaatatttgggttttcccatgatgcatg |
33249520 |
T |
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| Q |
101 |
gatgcctccaaaggagagattttgaa-ttttttgaggaaaacatatgccaacggttagcttcgcggcaacatcacctgttaaacaaagttggttgaatga |
199 |
Q |
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|| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||| |||||| |
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| T |
33249521 |
gaggcctccaaaggagagattttgaatttttttgaggaaaacataagccaacggttagcttcgtggcaacatcacctgttgaacaaagttggtcgaatga |
33249620 |
T |
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| Q |
200 |
ctttggttaaatctgtattaatttcaattccctatt |
235 |
Q |
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||||||||||||||||||||| ||| |||||||||| |
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| T |
33249621 |
ctttggttaaatctgtattaaattctattccctatt |
33249656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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