View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20473_low_37 (Length: 250)
Name: NF20473_low_37
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20473_low_37 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 74 - 245
Target Start/End: Complemental strand, 53735004 - 53734847
Alignment:
| Q |
74 |
aataatacttttcattgaaaatgtatatatggtaaagattaattattggatttgtatataattttaaagataagagaaagttgtagtttagaatgatagt |
173 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
53735004 |
aataatacttgtcattaaaaatgtatatatcgtaaagactaattattggatttgtatataattttaaagataagagaaagttgtaggttagaatgatagt |
53734905 |
T |
|
| Q |
174 |
agcgattatttcattcttcaatacatgatggcatatccaatggaaaagctatacaggattttgtaagttgat |
245 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
53734904 |
agccattatttcattc--------------gcatatccaatggaaaagctatacaagattttgtaagttgat |
53734847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 53735126 - 53735063
Alignment:
| Q |
8 |
ccaagaaaattgtcgttgcgaggatagtatctcaactgatttgaattaaggaataaggattttg |
71 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
53735126 |
ccaacaaaattgttgttgcgaggatagtatctcaactgatttgaattaaggaataagaattttg |
53735063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University