View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20473_low_42 (Length: 222)
Name: NF20473_low_42
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20473_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 37841008 - 37841196
Alignment:
| Q |
16 |
aagaaagtactaagagcattgaaccgcaaagtacttgaaattgctccatgttccgttggaatacttgtaacccgtgctaattcaataccgaaaccaacat |
115 |
Q |
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| T |
37841008 |
aagaaagtactaagagcattgaaccgcaaagtacttgaaattgctccatgttccgttggaatacttgtaacccgtgctaattcaataccgaaaccaacat |
37841107 |
T |
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| Q |
116 |
cagaatattctaatactcgattagccatcatatatttaggccgaaatgacgatgatgaagaggtcttatgtttagcaaaaagagcaatg |
204 |
Q |
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| T |
37841108 |
cagaatattctaatactcgattagccatcatatatttaggcggaaatgacgatgatgaagaggtcttatgtttagcaaaaagagcaatg |
37841196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 38381260 - 38381067
Alignment:
| Q |
16 |
aagaaagtactaagagcattgaaccgcaaagtacttgaaattgctccatgttccgttggaatacttgtaacccgtgctaattcaataccgaaaccaac-- |
113 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | ||||||||| |
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| T |
38381260 |
aagaaagtactaagagcattgaaccggagagtacttgaaattgctccatgttccgttggaatccttgtaactcgtgctaattcaatgcagaaaccaacat |
38381161 |
T |
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| Q |
114 |
-------atcagaatattctaatactcgattagccatcatatatttaggccgaaatgacgatgatgaagaggtcttatgtttagcaaaaagagc |
200 |
Q |
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| T |
38381160 |
ctattaaatcagaatattccactactcgattagccatcatatatttaggtggaaatgacgatgatgaagaggtcttatgtttagcaaaacgagc |
38381067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 38390135 - 38389938
Alignment:
| Q |
16 |
aagaaagtactaagagcattgaaccgcaaagtacttgaaattgctccatgttccgttggaatacttgtaacccgtgctaattcaataccgaaacc----- |
110 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| |
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| T |
38390135 |
aagaaagtactaagagcattgaaccgcagagtactcgaaattgctccatgttccgttggaatccttgtaactcgtgctaattcaatgccgaaaccaacac |
38390036 |
T |
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| Q |
111 |
-------------aacatcagaatattctaatactcgattagccatcatatatttaggccgaaatgacgatgatgaagaggtcttatgtttagcaaaa |
195 |
Q |
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| T |
38390035 |
taacaacatcaataacattagaatattccactactcgattagccatcatatatttaggtggaaatgacgatgatgaagaggtcttatgtttagcaaaa |
38389938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 38398889 - 38398696
Alignment:
| Q |
16 |
aagaaagtactaagagcattgaaccgcaaagtacttgaaattgctccatgttccgttggaatacttgtaacccgtgctaattcaataccgaaaccaac-- |
113 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||| | |||||||||||||| | ||||||||| |
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| T |
38398889 |
aagaaaatactaagagcattgaaccgcagagtacttgaaattgctccatgttctgttggaatccttgtagctcgtgctaattcaatgcagaaaccaacat |
38398790 |
T |
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| Q |
114 |
-------atcagaatattctaatactcgattagccatcatatatttaggccgaaatgacgatgatgaagaggtcttatgtttagcaaaaagagc |
200 |
Q |
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|||||||| ||| | |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38398789 |
caataacatcagaatgttccatgactcaattagccatcatatatttaggtggaaatgacgatgatgaagaggtcttatgtttagcaaaacgagc |
38398696 |
T |
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