View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20473_low_5 (Length: 578)

Name: NF20473_low_5
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20473_low_5
NF20473_low_5
[»] chr5 (3 HSPs)
chr5 (16-338)||(18644968-18645290)
chr5 (35-118)||(18635755-18635838)
chr5 (260-322)||(17501036-17501098)
[»] chr2 (1 HSPs)
chr2 (314-562)||(10088338-10088584)
[»] chr1 (2 HSPs)
chr1 (35-118)||(15086699-15086782)
chr1 (307-339)||(46982862-46982894)
[»] chr7 (3 HSPs)
chr7 (260-322)||(14821564-14821626)
chr7 (260-322)||(15268570-15268632)
chr7 (261-337)||(34925272-34925346)
[»] chr8 (2 HSPs)
chr8 (314-359)||(7108269-7108314)
chr8 (264-341)||(30692402-30692482)


Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 18645290 - 18644968
Alignment:
Q  16 cagagaatgattttggtatctggaaaggtcaaggagagtgggaggaggattggggagaaacatatgctgcaaagagacaacctacactttttgttatcaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18645290 cagagaatgattttggtatctggaaaggtcaaggagagtgggaggaggattggggagaaacatatgctgcaaagagacaacctacactttttgttatcaa 18645191  T
Q  116 catcaacaggtttttcatcattcatattcatgtcagatattatttaggatcaatactcaatagttgtcaagtagcggcaatagaggcactgtagcgctgt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18645190 catcaacaggtttttcatcattcatattcatgtcagatattatttaggatcaatactcaatagttgtcaagtagcggcaatagaggcactgtagcgctgt 18645091  T
Q  216 cgcacaacataactttatctaattgctattgtgcgatgatacattgtttagtacaaagtgctctcaaatagtggctctatcgcagtgtagaatagccaaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18645090 cgcacaacataactttatctaattgctattgtgcgatgatacattgtttagtacaaagtgctctcaaatagtggctctatcgcagtgtagaatagccaaa 18644991  T
Q  316 tttgaacaaactgctattttccg 338  Q
    |||||||||||||||||||||||    
T  18644990 tttgaacaaactgctattttccg 18644968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 35 - 118
Target Start/End: Complemental strand, 18635838 - 18635755
Alignment:
Q  35 ctggaaaggtcaaggagagtgggaggaggattggggagaaacatatgctgcaaagagacaacctacactttttgttatcaacat 118  Q
    |||||||||||||||||| |||||||| || ||||||||||||||||| | ||| ||||| ||| |||||||||| || |||||    
T  18635838 ctggaaaggtcaaggagattgggaggaagactggggagaaacatatgcgggaaaaagacagcctgcactttttgtcataaacat 18635755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 260 - 322
Target Start/End: Complemental strand, 17501098 - 17501036
Alignment:
Q  260 tgtttagtacaaagtgctctcaaatagtggctctatcgcagtgtagaatagccaaatttgaac 322  Q
    |||||||||||||||||| |||||||||| | |||| ||| ||||| |||||  |||||||||    
T  17501098 tgtttagtacaaagtgctgtcaaatagtgacgctatagcattgtagcatagcagaatttgaac 17501036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 314 - 562
Target Start/End: Complemental strand, 10088584 - 10088338
Alignment:
Q  314 aatttgaacaaactgctattttccgctacccacagttaacgacactgatggaacacaatattctcatttgtaaattgtcatctaaaatacatcaaagttg 413  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10088584 aatttgaacaaaccgctattttccgctacccacagttaacgacactgatggaacacaatattctcatttgtaaattgtcatctaaaatacatcaaagttg 10088485  T
Q  414 cacaacaacttcatgatgaataagcatcagttccaaaaccccttattgaaaggaaaccacgagggctcacttggttgatatgtgcaaagtatgaagatac 513  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10088484 cacaacaacttcatgatgatcaagcatcagttccaaaaccccttattgaaaggaaaccacgagggctcacttggttgatatgtgcaaagtatgaagatac 10088385  T
Q  514 aaaaatagaggagaaaataaaatgagtttccataaaatatattattatc 562  Q
    |||||||||||| ||||||||  ||||||||||| ||||||||||||||    
T  10088384 aaaaatagaggataaaataaa--gagtttccatacaatatattattatc 10088338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 35 - 118
Target Start/End: Original strand, 15086699 - 15086782
Alignment:
Q  35 ctggaaaggtcaaggagagtgggaggaggattggggagaaacatatgctgcaaagagacaacctacactttttgttatcaacat 118  Q
    |||||||||||||||||| |||||||| || ||||||||||||||||| | ||| ||||| ||| |||||||||| || |||||    
T  15086699 ctggaaaggtcaaggagattgggaggaagactggggagaaacatatgcgggaaaaagacagcctgcactttttgtcataaacat 15086782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 307 - 339
Target Start/End: Original strand, 46982862 - 46982894
Alignment:
Q  307 atagccaaatttgaacaaactgctattttccgc 339  Q
    ||||| |||||||||||||||||||||||||||    
T  46982862 atagcaaaatttgaacaaactgctattttccgc 46982894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 260 - 322
Target Start/End: Original strand, 14821564 - 14821626
Alignment:
Q  260 tgtttagtacaaagtgctctcaaatagtggctctatcgcagtgtagaatagccaaatttgaac 322  Q
    |||||||||||||||||| |||||||||| | |||| ||| ||||| |||||  |||||||||    
T  14821564 tgtttagtacaaagtgctgtcaaatagtgacgctatagcattgtagcatagcagaatttgaac 14821626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 260 - 322
Target Start/End: Original strand, 15268570 - 15268632
Alignment:
Q  260 tgtttagtacaaagtgctctcaaatagtggctctatcgcagtgtagaatagccaaatttgaac 322  Q
    |||||||||||||||||| |||||||||| | |||| ||| ||||| |||||  |||||||||    
T  15268570 tgtttagtacaaagtgctgtcaaatagtgacgctatagcattgtagcatagcagaatttgaac 15268632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 337
Target Start/End: Complemental strand, 34925346 - 34925272
Alignment:
Q  261 gtttagtacaaagtgctctcaaatagtggctctatcgcagtgtagaatagccaaatttgaacaaactgctattttcc 337  Q
    |||||||||||| || | |||||||| |||| ||  ||| ||||| |||||  ||||||||||||||||||||||||    
T  34925346 gtttagtacaaaatgttgtcaaatagcggctata--gcattgtagcatagcagaatttgaacaaactgctattttcc 34925272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 359
Target Start/End: Original strand, 7108269 - 7108314
Alignment:
Q  314 aatttgaacaaactgctattttccgctacccacagttaacgacact 359  Q
    |||||||||||||||||||||||||||| ||||  ||||| |||||    
T  7108269 aatttgaacaaactgctattttccgctatccacgattaacaacact 7108314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 341
Target Start/End: Complemental strand, 30692482 - 30692402
Alignment:
Q  264 tagtacaaagtgctctcaaatagtggctctatcgcagtgtagaatagcca-aatttga--acaaactgctattttccgcta 341  Q
    |||||||||||| | |||||||| ||| |||| ||||| ||| ||||||| |||||||  ||||| |||||||||||||||    
T  30692482 tagtacaaagtgttgtcaaatagcggcgctatagcagtctagcatagccagaatttgaacacaaaatgctattttccgcta 30692402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University