View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20473_low_6 (Length: 536)
Name: NF20473_low_6
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20473_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 15 - 518
Target Start/End: Original strand, 37063848 - 37064351
Alignment:
| Q |
15 |
cataggggaaatggttccaaagaaagaattgtgtgacaaatccaaatagatgacatttgctgatatatgtgggagccctcctctgaaattattgtggtcc |
114 |
Q |
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| T |
37063848 |
cataggggaaatggttccaaagaaagaattgtgtgacaaatccaaatagatgacatttgctgatatatgtgggagccctcctctgaaattattgtggtcc |
37063947 |
T |
|
| Q |
115 |
ataaatagaagttccgagtttagcgtgacatttgataagtctgcactcatgctgttgttagacaagttaagctgtgtaatattagttacaaatctccaaa |
214 |
Q |
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| T |
37063948 |
ataaatagaagttccgagtttagcgtgacatttgataagtctgcactcatgctgttgttagacaagttaaggtgtgtaatattagttacaaatctccaaa |
37064047 |
T |
|
| Q |
215 |
atatgtctccatctatggatgaaactctagagttaggaatctcaagatattctagcgacctttgtgtatatatccatgttggaaacttaggacctagaat |
314 |
Q |
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| T |
37064048 |
atatgtctccatctatggatgaaactctagagttaggaatctcaagatattctagtgacctttgtgtatatatccatgttggaaacttaggacctagaat |
37064147 |
T |
|
| Q |
315 |
tgtattgcttaaacttatcccgttcaattgaaatggaggaatccatttagaatccatatcaaatgaaatcagtgcactcaagaccaatgtttctaaacta |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37064148 |
tgtattgcttaaacttatcccgttcaattgaaatggaggaatccatttagaatccatatcaaatgaaatcggtgcactcaagaccaatgtttctaaacta |
37064247 |
T |
|
| Q |
415 |
gagagattggaaaaatgtatttcagatagaacacctgacaaggaacttcctccaatgaccaaactcttcaaattaaagagttttccaatgctggttggaa |
514 |
Q |
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| T |
37064248 |
gagagattggaaaaatgtatttcagatagaacacctgacaaggaacttcctccaatgaccaaactcttcaaattaaagagttttccaatgctggttggaa |
37064347 |
T |
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| Q |
515 |
tatt |
518 |
Q |
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| T |
37064348 |
tatt |
37064351 |
T |
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