View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20473_low_8 (Length: 507)
Name: NF20473_low_8
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20473_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 16 - 493
Target Start/End: Complemental strand, 1351183 - 1350706
Alignment:
| Q |
16 |
caaaggcaccccattacttatactttcaattgttgaattccaaccacagtgactcaaaaaccctcccactgctttgtgctttagaactttctcttgtgga |
115 |
Q |
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| T |
1351183 |
caaaggcaccccattacttatactttcaattgttgaattccaaccacagtgactcaaaaaccctcccactgctttgtgctttagaactttctcttgtgga |
1351084 |
T |
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| Q |
116 |
caccaacctaccattagtcctctatctttggtttcttccacaatttcttgtggcacaagcaatgtttcactttcacccttaactaaatcaggcctaatca |
215 |
Q |
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| T |
1351083 |
caccaacctaccattagtcctctatctttggtttcttccacaatttcttgtggcacaagcaatgtttcactttcacccttaactaaatcaggcctaatca |
1350984 |
T |
|
| Q |
216 |
cccacaagaactttttcttactatttgctaatccccatgccaattcaactagctggttatacttcatgactataacacttccaaaattcacatagagaac |
315 |
Q |
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| T |
1350983 |
cccacaagaactttttcttgctatttgctaatccccatgccaattcaactagctggttatacttcatgactataacacttccaaaattcacatagagaac |
1350884 |
T |
|
| Q |
316 |
agaattttcttcctgtgaatctagccatttgagacactcactctcttctttccacaaattgcattgaatagattcaaatccattattttctgaaatttta |
415 |
Q |
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| T |
1350883 |
agaattttcttcctgtgaatctagccatttgagacactcactctcttctttccacaaattgcattgaatagattcaaatccattattttctgaaatttta |
1350784 |
T |
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| Q |
416 |
tcaaggaacaaatcaagtgggcctaatgtgtagagtttaggaaacattgtggagagctcattcaatacatcatactcc |
493 |
Q |
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| T |
1350783 |
tcaaggaacaaatcaagtgggcctaatgtgtagagtttaggaaacattgtggagagctcattcaatacatcatactcc |
1350706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 4560855 - 4560896
Alignment:
| Q |
101 |
actttctcttgtggacaccaacctaccattagtcctctatct |
142 |
Q |
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| T |
4560855 |
actttctcttgtggacaccaacttgctattagtcctctatct |
4560896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 4574657 - 4574698
Alignment:
| Q |
101 |
actttctcttgtggacaccaacctaccattagtcctctatct |
142 |
Q |
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| T |
4574657 |
actttctcttgtggacaccaacttgctattagtcctctatct |
4574698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 1965248 - 1965204
Alignment:
| Q |
37 |
actttcaattgttgaattccaaccacagtgactcaaaaaccctcc |
81 |
Q |
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| T |
1965248 |
actttcaagggttgagttccaaccacagtgactcaagaaccctcc |
1965204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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