View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20473_low_9 (Length: 481)
Name: NF20473_low_9
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20473_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 73 - 360
Target Start/End: Original strand, 40125928 - 40126226
Alignment:
| Q |
73 |
gtaaactttcaagttggatcttgtaaagtgagtaacattaatagttgttgtaacaaactaacggttttttataatatatatacttataatatctacatga |
172 |
Q |
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| T |
40125928 |
gtaaactttcaagttggatcttgtaaagtgagtaacataaatagttgttgtaacaaactaacggttttttataatatatatacttataatatctacatga |
40126027 |
T |
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| Q |
173 |
tattattcactttataaagtgagttcctcattttaaagtaatcgtaaactttaaaaa-----------ggattatatagaaatcggtgggagtttacgtt |
261 |
Q |
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| T |
40126028 |
tattattcactttataaagtgagttcctcattttaaagtaatcgtaaactttaaaaatcctagatattggattatatagaagtcggtgagagtttacgtt |
40126127 |
T |
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| Q |
262 |
caagacaa-agttattatcattcctaaaaaatgacaagagttattattttgattaggttcaacaaaacttctctctatttctctccaccattttacttac |
360 |
Q |
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| T |
40126128 |
caagacaagagttattatcattcctcaaaaatgacaagagttatta-tctgattaggttcaacaaaacttctctctatttctctccaccattttacttac |
40126226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 40125897 - 40125940
Alignment:
| Q |
7 |
tcgaagaaaatgtcaatatgttattttatttgtaaactttcaag |
50 |
Q |
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| T |
40125897 |
tcgaacaatatgtcaatatgttattttatttgtaaactttcaag |
40125940 |
T |
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