View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20474_high_11 (Length: 273)
Name: NF20474_high_11
Description: NF20474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20474_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 17546886 - 17546633
Alignment:
| Q |
1 |
tcaggcattaccatacttaacaagttcaacatcaaagagatgggtaccttacaagaaatggtagttaaatttggagttgaagaggcaagtgcattattct |
100 |
Q |
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| T |
17546886 |
tcaggcattaccatacttaacaagttcaacatcaaagagatgggtaccttacaagaaatggtagttgaatttggagttgaagaggcaagtgcattattct |
17546787 |
T |
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| Q |
101 |
tgtgtgaattaaattatttgttaccttttacaccttaattttataatgttgctttgagtattgaacttaatcactcgaatgatatgttgnnnnnnnggtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
17546786 |
tgtgtgaattaaattatttgttaccttttacaccttaattttataatgttgctttgagtattgaacttaatcgctcgaatgatatgttgtttttttggtt |
17546687 |
T |
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| Q |
201 |
ctaacagggttcaaagttgcttaaggcttctctgcaatcaaagatggtattgac |
254 |
Q |
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| T |
17546686 |
ctaacagggttcaaagttgcttaaggcttctctgcaatcaaagatggtattgac |
17546633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 17016449 - 17016196
Alignment:
| Q |
1 |
tcaggcattaccatacttaacaagttcaacatcaaagagatgggtaccttacaagaaatggtagttaaatttggagttgaagaggcaagtgcattattct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17016449 |
tcaggcattaccatacttaacaagttcaacatcaaagagatgggtaccttacaagaaatggtagttgaatttggagttgaagaggcaagtgcattattct |
17016350 |
T |
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| Q |
101 |
tgtgtgaattaaattatttgttaccttttacaccttaattttataatgttgctttgagtattgaacttaatcactcgaatgatatgttgnnnnnnnggtt |
200 |
Q |
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| T |
17016349 |
tgtgtgaattaaattatttgttacgttttacaccttaattttataatgttgctttgagtattgaacttaatcgctcgaatgatatgttgtttttttgttt |
17016250 |
T |
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| Q |
201 |
ctaacagggttcaaagttgcttaaggcttctctgcaatcaaagatggtattgac |
254 |
Q |
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| T |
17016249 |
ctaacagggttcaaagttgcttaaggcttctctgcaatcaaagatggtattgac |
17016196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 17522994 - 17523034
Alignment:
| Q |
214 |
aagttgcttaaggcttctctgcaatcaaagatggtattgac |
254 |
Q |
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| T |
17522994 |
aagttgctgaaggcttctctgcaatccaagatggtcttgac |
17523034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 52145071 - 52145031
Alignment:
| Q |
214 |
aagttgcttaaggcttctctgcaatcaaagatggtattgac |
254 |
Q |
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|||||||| ||||||||||||||||| || ||||||||||| |
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| T |
52145071 |
aagttgctaaaggcttctctgcaatccaaaatggtattgac |
52145031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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