View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20474_high_12 (Length: 252)
Name: NF20474_high_12
Description: NF20474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20474_high_12 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 7198377 - 7198628
Alignment:
| Q |
1 |
ttatgtaggtaatgagttgagtggtacaggcgttcgtgcatcagttgacgttgcacagtatgggaaagacgtgataaaccttaaacgaattcttgatgag |
100 |
Q |
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| T |
7198377 |
ttatgtaggtaatgagttgagtggtacaggcgttcgtgcatcagttgacgttgcacagtatgggaaagacgtgataaaccttaaacgaattctagatgag |
7198476 |
T |
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| Q |
101 |
ttatacaagaactcgaggttcaaacccttacttgtagcacctgatggaagttatgataaggaatggtacaataagcttcttcagctttctggtccaggcg |
200 |
Q |
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| T |
7198477 |
ttatacaagaactcgaggttcaaacccttacttgtagcacctgatggaagttatgataaggaatggtacaataagcttcttcagctttctggtccaggcg |
7198576 |
T |
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| Q |
201 |
taatcaatgttctgactcatcatttatataacataggccgaggtttgcttat |
252 |
Q |
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| T |
7198577 |
taatcaatgttctgactcatcatttatataacataggccgaggtttgcttat |
7198628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 7205298 - 7205549
Alignment:
| Q |
1 |
ttatgtaggtaatgagttgagtggtacaggcgttcgtgcatcagttgacgttgcacagtatgggaaagacgtgataaaccttaaacgaattcttgatgag |
100 |
Q |
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| T |
7205298 |
ttatgtaggtaatgagttgagtggtacaggcgttggtgcatcagttgtcgttgcacagtatgggaaagacgtgataaaccttaaacgaattctagatgag |
7205397 |
T |
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| Q |
101 |
ttatacaagaactcgaggttcaaacccttacttgtagcacctgatggaagttatgataaggaatggtacaataagcttcttcagctttctggtccaggcg |
200 |
Q |
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| T |
7205398 |
ttatacaagaactcgaggttcaaacccttacttgtagcacctgatggaagttatgataaggaatggtacaataagcttcttcagctttctggtccaggcg |
7205497 |
T |
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| Q |
201 |
taatcaatgttctgactcatcatttatataacataggccgaggtttgcttat |
252 |
Q |
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| T |
7205498 |
taatcaatgttctgactcatcatttatataacataggccgaggtttgcttat |
7205549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 7211900 - 7212149
Alignment:
| Q |
1 |
ttatgtaggtaatgagttgagtggtacaggcgttcgtgcatcagttgacgttgcacagtatgggaaagacgtgataaaccttaaacgaattcttgatgag |
100 |
Q |
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|||||||||||||||||| |||||| |||| || |||||||||| | ||||||| ||||||||||||||||||||| |||||||||||||| |||| | |
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| T |
7211900 |
ttatgtaggtaatgagttaagtggtgaaggcattggtgcatcagtcggtgttgcacggtatgggaaagacgtgataaaacttaaacgaattctagatgtg |
7211999 |
T |
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| Q |
101 |
ttatacaagaactcgaggttcaaacccttacttgtagcacctgatggaagttatgataaggaatggtacaataagcttcttcagctttctggtccaggcg |
200 |
Q |
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||||||||||||| ||||||||||||| ||||||||||||| |||| ||||| ||||||||||||| |||||||||||| |||||||| |||||| |
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| T |
7212000 |
ttatacaagaacttaaggttcaaaccctcgcttgtagcacctggtggattttatgtaaaggaatggtacactaagcttcttcatatttctggttcaggcg |
7212099 |
T |
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| Q |
201 |
taatcaatgttctgactcatcatttatataacataggccgaggtttgctt |
250 |
Q |
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|| |||||||| | ||||||||| |||||||| | |||| |||||||||| |
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| T |
7212100 |
tagtcaatgttgtaactcatcatatatataacttgggcccaggtttgctt |
7212149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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