View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20474_high_2 (Length: 481)
Name: NF20474_high_2
Description: NF20474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20474_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 15 - 458
Target Start/End: Complemental strand, 8246303 - 8245859
Alignment:
| Q |
15 |
caaagggcagatgaagaaatgagaaaaggtttatttatcccttacaacggatatagtgtgtagtagttgtggacatcattagatttagtgaaataaattt |
114 |
Q |
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| T |
8246303 |
caaagggcagatgaagaaatgagaaaaggtttatttatcccttacaacagatatagtgtgtagtagttgtggacatcattagatttagtgaaataaattt |
8246204 |
T |
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| Q |
115 |
ctctttctagatttaatggtcttcactattataattattgcattgtgcaaccactgtagagaatacaagtctnnnnnnnngataaacgaagttggcaaaa |
214 |
Q |
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| T |
8246203 |
ctctttctagatttaatggtcttcactattataattattgcattgtgcaac---tgtagagaatacaagtctaaaaaaaagataaacgaagctggcaaaa |
8246107 |
T |
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| Q |
215 |
gctaacagcgaagaaaaataacgcaatttgagcagggagaat----aagtatggacttatggtgaagtacatgcaaatgattccaaatttgataccatgt |
310 |
Q |
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| T |
8246106 |
gctaacaacgaagaaaaataacgcaatttgagcagggagaatcaataagtatggacttatggtgaagtacatgcaaatgattccaaatttgataccatgt |
8246007 |
T |
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| Q |
311 |
gagcgattaaagaacactaaagaaatcttaacaacgatgatcaattttatagaactttactaagagaggttggtnnnnnnntggaagtatgctcgttatt |
410 |
Q |
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| T |
8246006 |
gagcgattaaagaacactaaagaaatcttaacaacgatgatcaacttcgtagaactttattaagagaggttggtgagaaaatggaagtatgctcgttatt |
8245907 |
T |
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| Q |
411 |
cactttgtacattgcagcatgtcattcacttttcacgcgatttcactc |
458 |
Q |
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| T |
8245906 |
cactttgtacaatgcagcatgtcattcacttttcgcacgatttcactc |
8245859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 304 - 382
Target Start/End: Complemental strand, 8447520 - 8447442
Alignment:
| Q |
304 |
accatgtgagcgattaaagaacactaaagaaatcttaacaacgatgatcaattttatagaactttactaagagaggttg |
382 |
Q |
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| T |
8447520 |
accatgtgagcaattaaataatcctgaagaaatcttaacaacaatgatcaatgttatagaactttattaagagaggttg |
8447442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 268 - 373
Target Start/End: Complemental strand, 8234139 - 8234039
Alignment:
| Q |
268 |
tatggtgaagtacatgcaaatgattccaaatttgataccatgtgagcgattaaagaacactaaagaaatcttaacaacgatgatcaattttatagaactt |
367 |
Q |
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| T |
8234139 |
tatggtgaagcacatgcaaatgaatccaagtttgagaccatgtgaaaggttaaagaatatcaaagaaaactt-----caatgatcaactttatagaactt |
8234045 |
T |
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| Q |
368 |
tactaa |
373 |
Q |
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|||||| |
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| T |
8234044 |
tactaa |
8234039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 359
Target Start/End: Complemental strand, 8237320 - 8237228
Alignment:
| Q |
267 |
ttatggtgaagtacatgcaaatgattccaaatttgataccatgtgagcgattaaagaacactaaagaaatcttaacaacgatgatcaatttta |
359 |
Q |
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| T |
8237320 |
ttatggtgaagtacatgcatatgaatccaagtttgaaaccacgtgagtggttaaacaaaactgaagaaatctttaaaccaacgatcaatttta |
8237228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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