View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20474_high_6 (Length: 373)

Name: NF20474_high_6
Description: NF20474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20474_high_6
NF20474_high_6
[»] chr2 (5 HSPs)
chr2 (16-141)||(14432817-14432942)
chr2 (201-276)||(44939842-44939917)
chr2 (201-305)||(79358-79462)
chr2 (201-305)||(3153691-3153795)
chr2 (201-305)||(10059925-10060029)
[»] chr3 (8 HSPs)
chr3 (201-305)||(50543108-50543212)
chr3 (201-292)||(11583658-11583749)
chr3 (201-301)||(30937112-30937212)
chr3 (201-305)||(40969797-40969901)
chr3 (199-274)||(53050572-53050647)
chr3 (201-305)||(16897028-16897133)
chr3 (201-280)||(19232694-19232773)
chr3 (201-279)||(31644539-31644617)
[»] chr6 (6 HSPs)
chr6 (201-305)||(3490293-3490397)
chr6 (201-305)||(31933833-31933937)
chr6 (199-305)||(26710816-26710922)
chr6 (201-305)||(16467002-16467106)
chr6 (201-305)||(33146921-33147025)
chr6 (201-277)||(1309120-1309196)
[»] chr4 (7 HSPs)
chr4 (199-305)||(19836718-19836824)
chr4 (201-305)||(38948330-38948434)
chr4 (201-305)||(53679566-53679670)
chr4 (201-301)||(43470258-43470358)
chr4 (201-296)||(19310040-19310135)
chr4 (248-305)||(54037030-54037087)
chr4 (228-276)||(8933210-8933258)
[»] chr8 (4 HSPs)
chr8 (201-294)||(24732734-24732827)
chr8 (201-279)||(41692213-41692291)
chr8 (201-305)||(13403668-13403769)
chr8 (201-292)||(43599085-43599176)
[»] chr5 (3 HSPs)
chr5 (201-305)||(3417550-3417654)
chr5 (201-305)||(841565-841671)
chr5 (209-277)||(2680748-2680816)
[»] chr7 (6 HSPs)
chr7 (201-305)||(43109357-43109461)
chr7 (201-279)||(34205939-34206017)
chr7 (224-296)||(18014907-18014980)
chr7 (201-305)||(4163622-4163726)
chr7 (201-305)||(39295826-39295930)
chr7 (201-305)||(45459015-45459119)
[»] chr1 (2 HSPs)
chr1 (201-305)||(6333084-6333188)
chr1 (201-305)||(10386366-10386470)


Alignment Details
Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 14432942 - 14432817
Alignment:
Q  16 acaacaacttccatggtcaaattaatctatagggtggtcaaaataataaaaggcttcaatcaaaaagtagacgtgagatgcaataaatggacatacaatt 115  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14432942 acaacaacttccatggtcaaattaatctacagggtggtcaaaataataaaaggcttcaatcaaaaagtagacgtgagatgcaataaatggacatacaatt 14432843  T
Q  116 aagcgcacgcaacaaaaatctgttag 141  Q
    ||||||||||||||||||||||||||    
T  14432842 aagcgcacgcaacaaaaatctgttag 14432817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 201 - 276
Target Start/End: Complemental strand, 44939917 - 44939842
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagc 276  Q
    ||||||||||||||||| |||| |||||||||||||||| ||| ||||   |||||||||||| ||||||||||||    
T  44939917 gttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttgattatcatttgtggtggcagc 44939842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 201 - 305
Target Start/End: Complemental strand, 79462 - 79358
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgtttgggggttg 300  Q
    ||||||||||||||||| |||| ||| |||||||||||| ||| ||||   |||| ||||||| |||||||||||||||  | ||||||||| ||| |||    
T  79462 gttaagattacatctctcaaatggttaaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcagcgtccccttgcttgtttagggattg 79363  T
Q  301 actga 305  Q
     ||||    
T  79362 gctga 79358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 201 - 305
Target Start/End: Original strand, 3153691 - 3153795
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgtttgggggttg 300  Q
    ||||||||||||||||| |||| |||||||||||||||| ||| ||||   |||| ||||||| | |||||||||||||  | || |||||| ||| |||    
T  3153691 gttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttatggtggcagcgtccccttgtttgtttagggattg 3153790  T
Q  301 actga 305  Q
    |||||    
T  3153791 actga 3153795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 201 - 305
Target Start/End: Complemental strand, 10060029 - 10059925
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgtttgggggttg 300  Q
    ||||||||||||||||| |||| |||||||||||||||| ||| ||||   |||| ||||||| | ||| |||||||||  | ||||||||| ||| |||    
T  10060029 gttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttatggcggcagcgtccccttgcttgtttagggattg 10059930  T
Q  301 actga 305  Q
     ||||    
T  10059929 gctga 10059925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 201 - 305
Target Start/End: Original strand, 50543108 - 50543212
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgtttgggggttg 300  Q
    ||||||||||||||||| |||| |||||||||||||||||||| |||||  ||| |||||||| ||||||||||||||||   ||||||||| ||| |||    
T  50543108 gttaagattacatctctcaaatggttgaaagcaaaaaatatgtgcttttctttttattatcatttgtggtggcagcgtctcattgcttgtttagggattg 50543207  T
Q  301 actga 305  Q
    |||||    
T  50543208 actga 50543212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 292
Target Start/End: Complemental strand, 11583749 - 11583658
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgttt 292  Q
    ||||||||||||||||| |||| |||||||||||||||| |||  |||  ||||| ||| |||||||||||||||||||| | |||||||||    
T  11583749 gttaagattacatctctcaaattgttgaaagcaaaaaatgtgtgttttccatttggttaccatatgtggtggcagcgtctccttgcttgttt 11583658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 301
Target Start/End: Original strand, 30937112 - 30937212
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgtttgggggttg 300  Q
    ||||||||||||||||| |||| |||||||||||||||| |||  ||||  |||| ||||||| |||||||||||||||  | ||||||||| ||| |||    
T  30937112 gttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgattttcttttggttatcatttgtggtggcagcgtccccttgcttgtttagggattg 30937211  T
Q  301 a 301  Q
    |    
T  30937212 a 30937212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 305
Target Start/End: Complemental strand, 40969901 - 40969797
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgtttgggggttg 300  Q
    ||||||||||||||||| || | |||||||||||||||| ||| ||||  ||||| |||||||||||||||||| ||||    ||||||||||||| |||    
T  40969901 gttaagattacatctctcaagtggttgaaagcaaaaaatgtgtgctttccatttggttatcatatgtggtggcaacgtccctttgcttgtttggggattg 40969802  T
Q  301 actga 305  Q
     ||||    
T  40969801 gctga 40969797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 199 - 274
Target Start/End: Complemental strand, 53050647 - 53050572
Alignment:
Q  199 atgttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggca 274  Q
    ||||||||||||||||||| |||| |||||||||||||||| |||  |||| ||||| ||||||||| ||||||||    
T  53050647 atgttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgtttttcatttggttatcatatatggtggca 53050572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 201 - 305
Target Start/End: Original strand, 16897028 - 16897133
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagc-aaaaaatatgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgtttgggggtt 299  Q
    ||||||||||||||||| |||| ||||||||| ||||||| ||| ||||   |||| ||||||| |||||||||||||||  | ||||||||| ||| ||    
T  16897028 gttaagattacatctctcaaatggttgaaagcaaaaaaatgtgtgctttccttttggttatcatttgtggtggcagcgtccccttgcttgtttagggatt 16897127  T
Q  300 gactga 305  Q
    ||||||    
T  16897128 gactga 16897133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 19232773 - 19232694
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtct 280  Q
    ||||||||||||||||| |||| |||||||||||||||| ||| ||||   ||||  |||||| ||||||||||||||||    
T  19232773 gttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggatatcatttgtggtggcagcgtct 19232694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 31644617 - 31644539
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtc 279  Q
    ||||||||||||||||| |||| |||||||| ||||||| |||  |||   |||| ||||||| |||||||||||||||    
T  31644617 gttaagattacatctctcaaatggttgaaagtaaaaaatgtgtgttttccttttggttatcatttgtggtggcagcgtc 31644539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 201 - 305
Target Start/End: Original strand, 3490293 - 3490397
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgtttgggggttg 300  Q
    |||||||||| ||||||||||| |||||||||||||||| ||| ||||   |||| ||| |||||||||||||||||||  | | ||||||||||| |||    
T  3490293 gttaagattatatctcttaaatggttgaaagcaaaaaatgtgtgctttccttttggttaccatatgtggtggcagcgtccccttacttgtttggggattg 3490392  T
Q  301 actga 305  Q
    |||||    
T  3490393 actga 3490397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 201 - 305
Target Start/End: Complemental strand, 31933937 - 31933833
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgtttgggggttg 300  Q
    |||||||||| ||||||||||| |||||||||||||||| ||| ||||   |||| ||| |||||||||||||||||||  | | ||||||||||| |||    
T  31933937 gttaagattatatctcttaaatggttgaaagcaaaaaatgtgtgctttccttttggttaccatatgtggtggcagcgtccccttacttgtttggggattg 31933838  T
Q  301 actga 305  Q
    |||||    
T  31933837 actga 31933833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 199 - 305
Target Start/End: Complemental strand, 26710922 - 26710816
Alignment:
Q  199 atgttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgtttgggggt 298  Q
    ||||||||||||||||||| |||| |||||||||||||||| ||| ||||   |||| ||||||| |||||||||||||||  | ||||||||| ||| |    
T  26710922 atgttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcagcgtccccttgcttgtttagggat 26710823  T
Q  299 tgactga 305  Q
    || ||||    
T  26710822 tggctga 26710816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 305
Target Start/End: Complemental strand, 16467106 - 16467002
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgtttgggggttg 300  Q
    ||||||||||||||||| |||| ||||||| |||||||| ||| ||||   |||||||||||| |||||||||||||||  | ||||||||| ||| |||    
T  16467106 gttaagattacatctctcaaatggttgaaaacaaaaaatgtgtgctttccttttgattatcatttgtggtggcagcgtccccttgcttgtttagggattg 16467007  T
Q  301 actga 305  Q
     ||||    
T  16467006 gctga 16467002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 201 - 305
Target Start/End: Original strand, 33146921 - 33147025
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgtttgggggttg 300  Q
    ||||||||||||||||| |||| ||||||| ||||||||| || ||||   |||| ||||||| |||||||||||||||  | ||||||||| | | |||    
T  33146921 gttaagattacatctctcaaatggttgaaatcaaaaaatacgtgctttccttttggttatcatttgtggtggcagcgtccccttgcttgtttagagattg 33147020  T
Q  301 actga 305  Q
    |||||    
T  33147021 actga 33147025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 1309120 - 1309196
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcg 277  Q
    ||||||||||||||||| |||| |||||||||||||||| |||  |||   |||| ||||||| ||||||| |||||    
T  1309120 gttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgttttccttttggttatcatttgtggtgacagcg 1309196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 199 - 305
Target Start/End: Complemental strand, 19836824 - 19836718
Alignment:
Q  199 atgttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgtttgggggt 298  Q
    ||||||||||||||||||| || | |||||||||||||||| ||| ||||  ||||| |||||||||||||||||| ||||    ||||||||||||| |    
T  19836824 atgttaagattacatctctcaagtggttgaaagcaaaaaatgtgtgctttccatttggttatcatatgtggtggcaacgtccctttgcttgtttggggat 19836725  T
Q  299 tgactga 305  Q
    || ||||    
T  19836724 tggctga 19836718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 201 - 305
Target Start/End: Original strand, 38948330 - 38948434
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgtttgggggttg 300  Q
    ||||||||||||||||| |||| |||||||||||||||| ||| ||||   |||| ||||||| |||||||||||| ||  | ||||||||| ||  |||    
T  38948330 gttaagattacatctctcaaattgttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcagcatccccttgcttgtttaggaattg 38948429  T
Q  301 actga 305  Q
    |||||    
T  38948430 actga 38948434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 201 - 305
Target Start/End: Original strand, 53679566 - 53679670
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgtttgggggttg 300  Q
    ||||||||||||||||| |||| |||||||||||||||| | | |||||  ||||  |||||| |||||||||||||||  | ||||||||| ||| |||    
T  53679566 gttaagattacatctctcaaatggttgaaagcaaaaaatgtatgcttttcttttggatatcatttgtggtggcagcgtccacttgcttgtttagggattg 53679665  T
Q  301 actga 305  Q
     ||||    
T  53679666 gctga 53679670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 201 - 301
Target Start/End: Original strand, 43470258 - 43470358
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgtttgggggttg 300  Q
    |||| |||||| |||||||||| |||||||||||||||| ||| ||||   |||| ||| |||||||||||| ||||||| | | ||| ||||||| |||    
T  43470258 gttatgattacttctcttaaatggttgaaagcaaaaaatgtgtgctttccttttggttaccatatgtggtggtagcgtctccttacttatttggggattg 43470357  T
Q  301 a 301  Q
    |    
T  43470358 a 43470358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 296
Target Start/End: Original strand, 19310040 - 19310135
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgtttgggg 296  Q
    |||||||| | ||||||| ||| |||||||||||||||| ||| ||||   |||| ||| ||| |||||||||||||||  | | |||||||||||    
T  19310040 gttaagatcatatctcttcaatggttgaaagcaaaaaatgtgtgctttccttttggttaccatgtgtggtggcagcgtccccttacttgtttgggg 19310135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 305
Target Start/End: Original strand, 54037030 - 54037087
Alignment:
Q  248 tttatttgattatcatatgtggtggcagcgtcttcctgcttgtttgggggttgactga 305  Q
    ||||||||||||||||||||||||||| | ||  | || |||||||||| ||||||||    
T  54037030 tttatttgattatcatatgtggtggcaacttccccttgtttgtttggggattgactga 54037087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 8933210 - 8933258
Alignment:
Q  228 aaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagc 276  Q
    |||||||||||||||| ||||   |||| ||||||||||||||||||||    
T  8933210 aaagcaaaaaatatgtgctttccttttggttatcatatgtggtggcagc 8933258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 201 - 294
Target Start/End: Complemental strand, 24732827 - 24732734
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgtttgg 294  Q
    |||||||||| ||||||||||| |||||||||||||||| ||| ||||   |||| ||| |||||||||||||||||||  | |||||||||||    
T  24732827 gttaagattatatctcttaaatggttgaaagcaaaaaatgtgtgctttccttttggttaccatatgtggtggcagcgtccccttgcttgtttgg 24732734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 41692213 - 41692291
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtc 279  Q
    |||||||||| ||||||||||| |||||||||||||||| ||| ||||   | || |||||||||||||||||||||||    
T  41692213 gttaagattatatctcttaaatggttgaaagcaaaaaatgtgtgctttccttatggttatcatatgtggtggcagcgtc 41692291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 201 - 305
Target Start/End: Complemental strand, 13403769 - 13403668
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgtttgggggttg 300  Q
    ||||||||||||||||| |||| |||||||||||||||| ||| ||||   ||||||||||||   | |||||||||||  | ||||||||| ||| |||    
T  13403769 gttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttgattatcat---ttgtggcagcgtccccttgcttgtttagggattg 13403673  T
Q  301 actga 305  Q
    |||||    
T  13403672 actga 13403668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 292
Target Start/End: Complemental strand, 43599176 - 43599085
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgttt 292  Q
    ||||||||||||||||| |||| |||||||||||||||| |||  |||   |||  ||||||| |||||||||||||||  | |||||||||    
T  43599176 gttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgttttccttttagttatcatttgtggtggcagcgtccccttgcttgttt 43599085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 305
Target Start/End: Complemental strand, 3417654 - 3417550
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgtttgggggttg 300  Q
    ||||||||||||||||| ||||  ||||||||| ||||| ||| ||||   |||| |||||||||||||||||||||||  | ||||||||| ||| |||    
T  3417654 gttaagattacatctctcaaatgattgaaagcacaaaatgtgtgctttccttttggttatcatatgtggtggcagcgtccccttgcttgtttagggattg 3417555  T
Q  301 actga 305  Q
    |||||    
T  3417554 actga 3417550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 201 - 305
Target Start/End: Complemental strand, 841671 - 841565
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaata--tgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgtttgggggt 298  Q
    ||||| ||||||||||| |||| |||||||||||||||||  ||| ||||  |||||  ||||||||||||||||| ||||  | ||||||||||||| |    
T  841671 gttaaaattacatctctcaaatggttgaaagcaaaaaatatgtgtgctttccatttgtgtatcatatgtggtggcaacgtccccttgcttgtttggggat 841572  T
Q  299 tgactga 305  Q
    |||||||    
T  841571 tgactga 841565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 277
Target Start/End: Complemental strand, 2680816 - 2680748
Alignment:
Q  209 tacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcg 277  Q
    ||||||||| |||| ||||||||||  |||| | | ||||  ||||| |||||||||||||||||||||    
T  2680816 tacatctctcaaatggttgaaagcattaaatgtatgctttccatttggttatcatatgtggtggcagcg 2680748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 201 - 305
Target Start/End: Original strand, 43109357 - 43109461
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgtttgggggttg 300  Q
    ||||||||||||||||| |||| |||||||||||||||| ||| ||||   |||| ||||||| | ||| |||||||||  | ||||||||| ||| |||    
T  43109357 gttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttatggcggcagcgtccccttgcttgtttagggattg 43109456  T
Q  301 actga 305  Q
    |||||    
T  43109457 actga 43109461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 34206017 - 34205939
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtc 279  Q
    ||||||||||||||||| |||| |||||||||||||||| ||| ||||   |||| ||||||| | |||||||||||||    
T  34206017 gttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttatggtggcagcgtc 34205939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 296
Target Start/End: Complemental strand, 18014980 - 18014907
Alignment:
Q  224 gttgaaagcaaaaaa-tatgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgtttgggg 296  Q
    ||||||||||||||| | |||  ||||||||||||||||||||||||||||||||||    |||||||||||||    
T  18014980 gttgaaagcaaaaaaatgtgtgttttttatttgattatcatatgtggtggcagcgtccctttgcttgtttgggg 18014907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 201 - 305
Target Start/End: Complemental strand, 4163726 - 4163622
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgtttgggggttg 300  Q
    ||||||||||||||||| |||| |||||||||||||||| ||| ||||   |||| ||||||| | ||| |||||||||  | ||||||||| ||| |||    
T  4163726 gttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttatggcggcagcgtccccttgcttgtttagggattg 4163627  T
Q  301 actga 305  Q
     ||||    
T  4163626 gctga 4163622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 201 - 305
Target Start/End: Original strand, 39295826 - 39295930
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgtttgggggttg 300  Q
    |||||||||| |||||| | || ||||||| |||||||| ||| ||||| ||||| |||| ||||||||||||||| ||  | |  |||||||||| |||    
T  39295826 gttaagattatatctctcagatggttgaaaacaaaaaatgtgtgcttttcatttggttattatatgtggtggcagcatccccttatttgtttggggattg 39295925  T
Q  301 actga 305  Q
    |||||    
T  39295926 actga 39295930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 201 - 305
Target Start/End: Complemental strand, 45459119 - 45459015
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgtttgggggttg 300  Q
    ||||||||||||||||| || | |||||||||||||||| ||| ||||  ||||| ||||||||||| ||| || ||||    ||||||||||||| |||    
T  45459119 gttaagattacatctctcaagtggttgaaagcaaaaaatgtgtgctttccatttggttatcatatgtagtgacaacgtccctttgcttgtttggggattg 45459020  T
Q  301 actga 305  Q
     ||||    
T  45459019 gctga 45459015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 201 - 305
Target Start/End: Original strand, 6333084 - 6333188
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgtttgggggttg 300  Q
    |||||||||| ||||||||||| |||||||| ||||||| ||| ||||   |||| ||| |||||||||||||| ||||  | | ||||||||||| |||    
T  6333084 gttaagattatatctcttaaatggttgaaagaaaaaaatgtgtgctttccttttggttaccatatgtggtggcaacgtccccttacttgtttggggattg 6333183  T
Q  301 actga 305  Q
     ||||    
T  6333184 gctga 6333188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 201 - 305
Target Start/End: Original strand, 10386366 - 10386470
Alignment:
Q  201 gttaagattacatctcttaaatagttgaaagcaaaaaatatgtactttttatttgattatcatatgtggtggcagcgtcttcctgcttgtttgggggttg 300  Q
    ||||||||||||||||| |||| |||||||||||||||| ||| ||||   |||| ||||||| | ||| |||||||||  | ||||||||| ||| |||    
T  10386366 gttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttatggcggcagcgtccccttgcttgtttagggattg 10386465  T
Q  301 actga 305  Q
     ||||    
T  10386466 gctga 10386470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University