View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20474_high_8 (Length: 319)

Name: NF20474_high_8
Description: NF20474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20474_high_8
NF20474_high_8
[»] chr4 (17 HSPs)
chr4 (3-303)||(6839515-6839814)
chr4 (18-66)||(2536983-2537031)
chr4 (200-241)||(6755390-6755431)
chr4 (18-67)||(12274267-12274316)
chr4 (18-66)||(9034972-9035020)
chr4 (18-66)||(22359245-22359293)
chr4 (18-66)||(26006089-26006137)
chr4 (148-199)||(6755637-6755688)
chr4 (261-303)||(6817387-6817429)
chr4 (23-67)||(19396169-19396213)
chr4 (18-66)||(26429196-26429244)
chr4 (18-66)||(35853246-35853294)
chr4 (18-55)||(25058319-25058356)
chr4 (18-66)||(17423826-17423874)
chr4 (18-66)||(33846395-33846443)
chr4 (18-66)||(52759131-52759179)
chr4 (11-67)||(54552685-54552741)
[»] chr1 (3 HSPs)
chr1 (11-61)||(11080021-11080071)
chr1 (18-55)||(26347429-26347466)
chr1 (18-67)||(25070829-25070878)
[»] scaffold0450 (1 HSPs)
scaffold0450 (17-66)||(5377-5426)
[»] chr5 (7 HSPs)
chr5 (1-66)||(36978777-36978842)
chr5 (22-66)||(16007136-16007180)
chr5 (18-67)||(4052929-4052978)
chr5 (18-67)||(39861013-39861062)
chr5 (18-66)||(9609506-9609554)
chr5 (18-66)||(29242112-29242160)
chr5 (18-66)||(30796802-30796850)
[»] chr8 (9 HSPs)
chr8 (18-66)||(32282847-32282895)
chr8 (8-81)||(31037689-31037762)
chr8 (18-66)||(11503073-11503121)
chr8 (18-66)||(32578138-32578186)
chr8 (15-66)||(5839849-5839900)
chr8 (22-66)||(10631232-10631276)
chr8 (18-66)||(25663592-25663640)
chr8 (16-76)||(26006771-26006831)
chr8 (18-58)||(36531223-36531263)
[»] chr7 (10 HSPs)
chr7 (18-66)||(40187446-40187494)
chr7 (22-66)||(4595034-4595078)
chr7 (18-66)||(8150859-8150907)
chr7 (18-66)||(9360829-9360877)
chr7 (18-66)||(25611367-25611415)
chr7 (18-63)||(3962301-3962346)
chr7 (22-58)||(5866308-5866344)
chr7 (18-66)||(6596233-6596281)
chr7 (18-66)||(14160551-14160599)
chr7 (18-58)||(23362376-23362416)
[»] chr3 (7 HSPs)
chr3 (18-66)||(51952023-51952071)
chr3 (22-66)||(8457988-8458032)
chr3 (18-66)||(26400263-26400311)
chr3 (18-66)||(39383539-39383587)
chr3 (18-58)||(43018367-43018407)
chr3 (16-62)||(19396842-19396888)
chr3 (22-66)||(51191876-51191920)
[»] scaffold0011 (1 HSPs)
scaffold0011 (19-66)||(58488-58535)
[»] chr2 (5 HSPs)
chr2 (15-66)||(23769779-23769830)
chr2 (18-58)||(22606005-22606045)
chr2 (22-58)||(10213909-10213945)
chr2 (18-66)||(11616718-11616766)
chr2 (18-66)||(45085989-45086037)
[»] scaffold0552 (1 HSPs)
scaffold0552 (261-303)||(6404-6446)
[»] scaffold0360 (1 HSPs)
scaffold0360 (18-67)||(5315-5364)
[»] chr6 (8 HSPs)
chr6 (17-58)||(7608564-7608605)
chr6 (18-66)||(6192630-6192678)
chr6 (18-58)||(7435628-7435668)
chr6 (22-58)||(12523681-12523717)
chr6 (22-66)||(29025240-29025284)
chr6 (22-58)||(31797988-31798024)
chr6 (18-66)||(32957525-32957573)
chr6 (22-66)||(34183125-34183169)
[»] scaffold0279 (1 HSPs)
scaffold0279 (18-66)||(6800-6848)
[»] scaffold0200 (1 HSPs)
scaffold0200 (15-67)||(26941-26993)
[»] scaffold0016 (1 HSPs)
scaffold0016 (18-66)||(187213-187261)
[»] scaffold0577 (1 HSPs)
scaffold0577 (18-58)||(2211-2251)
[»] scaffold0201 (1 HSPs)
scaffold0201 (22-66)||(20721-20765)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 3 - 303
Target Start/End: Complemental strand, 6839814 - 6839515
Alignment:
Q  3 cacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttttcttatgtaaacaaacataattatacccaacactta 102  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6839814 cacatttttattagaattccatcttttatctctacgattattatgaataaaatgcactaagttttcttatgtaaacaaacataattatacccaacactta 6839715  T
Q  103 attaataagtttaacataaaagttgatgttaatcaattagaattattacctaactggttagcagtacgaaatctgtgacataattgaaccaagatggaca 202  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6839714 attaataagtttaaaataaa-gttgatgttaatcaattagaattattacctaactggttagcagtacgaaatctgtgacataattgaaccaagatggaca 6839616  T
Q  203 gaacaacgaaatgaattctaaattcaattcgaacttggatatacaaaatagtaagaactaagaattcatataacgatagaacactgaaattggtatgaat 302  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6839615 gaacaacgaaatgaattctaaattcaattcgaatttggatatacaaaatagtaagaactaagaattcatataacgatagaacactgaaattggtatgaat 6839516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 2537031 - 2536983
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||    
T  2537031 attccatcttgtatctctactattattatgaataaaatgcaataagttt 2536983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 6755431 - 6755390
Alignment:
Q  200 acagaacaacgaaatgaattctaaattcaattcgaacttgga 241  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  6755431 acagaacaacgaaatgaattctaaattcaattcgaatttgga 6755390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 12274267 - 12274316
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagtttt 67  Q
    |||||||||||||||||||| |||||||||||| ||||||| ||||||||    
T  12274267 attccatcttgtatctctactattattatgaatgaaatgcaataagtttt 12274316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 9034972 - 9035020
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||||||||||||| |||||||||||| ||||||| |||||||    
T  9034972 attccatcttgtatctctactattattatgaatgaaatgcaataagttt 9035020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 22359293 - 22359245
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||||||||||||| |||||||||||| ||||||| |||||||    
T  22359293 attccatcttgtatctctactattattatgaatgaaatgcaataagttt 22359245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 26006137 - 26006089
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||||||||||||| |||||||||||| ||||||| |||||||    
T  26006137 attccatcttgtatctctactattattatgaatgaaatgcaataagttt 26006089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 199
Target Start/End: Complemental strand, 6755688 - 6755637
Alignment:
Q  148 ttacctaactggttagcagtacgaaatctgtgacataattgaaccaagatgg 199  Q
    ||||||||||| |||||||||| ||||| ||||||| |||||||||||||||    
T  6755688 ttacctaactgattagcagtacaaaatcagtgacatcattgaaccaagatgg 6755637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 303
Target Start/End: Complemental strand, 6817429 - 6817387
Alignment:
Q  261 taagaattcatataacgatagaacactgaaattggtatgaata 303  Q
    |||||||||| |||||||||||||||||||| |||||||||||    
T  6817429 taagaattcaaataacgatagaacactgaaactggtatgaata 6817387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 19396213 - 19396169
Alignment:
Q  23 atcttgtatctctacgattattatgaataaaatgcactaagtttt 67  Q
    ||||||||||||||| |||||||||||| ||||||| ||||||||    
T  19396213 atcttgtatctctactattattatgaatgaaatgcaataagtttt 19396169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 26429244 - 26429196
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||||||||||||| |||||| ||||| ||||||| |||||||    
T  26429244 attccatcttgtatctctactattattttgaatgaaatgcaataagttt 26429196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 35853246 - 35853294
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||||||||||||| |||||| ||||| ||||||| |||||||    
T  35853246 attccatcttgtatctctactattattttgaattaaatgcaataagttt 35853294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 25058356 - 25058319
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaat 55  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  25058356 attcaatcttgtatctctactattattatgaataaaat 25058319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 17423874 - 17423826
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||||||||||||| ||||| |||||| |||| || |||||||    
T  17423874 attccatcttgtatctctactattatcatgaatgaaattcaataagttt 17423826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 33846395 - 33846443
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||||||| ||||| |||||| ||||| ||||||| |||||||    
T  33846395 attccatcttgtatttctactattattctgaatgaaatgcaataagttt 33846443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 52759179 - 52759131
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||| ||||||| ||| |||||||||||| ||||||| |||||||    
T  52759179 attccatcgtgtatctatactattattatgaatgaaatgcaataagttt 52759131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 54552685 - 54552741
Alignment:
Q  11 tatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagtttt 67  Q
    |||||| ||||| |||||||||| | | |||||||||||| ||||||| ||||||||    
T  54552685 tatcaggattccttcttgtatctttgctattattatgaatgaaatgcaataagtttt 54552741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 11080021 - 11080071
Alignment:
Q  11 tatcagaattccatcttgtatctctacgattattatgaataaaatgcacta 61  Q
    |||||| ||||||||||||||||||||||||||||| ||| ||||||||||    
T  11080021 tatcaggattccatcttgtatctctacgattattataaatgaaatgcacta 11080071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 26347429 - 26347466
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaat 55  Q
    |||||||||||||||||||| |||||||||||||||||    
T  26347429 attccatcttgtatctctactattattatgaataaaat 26347466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 25070878 - 25070829
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagtttt 67  Q
    |||||||||| ||||||||| |||||||||||| ||||||| ||| ||||    
T  25070878 attccatcttatatctctaccattattatgaatgaaatgcaataaatttt 25070829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 5377 - 5426
Alignment:
Q  17 aattccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    ||||||||||||||||||||| |||||||||||| ||||||| |||||||    
T  5377 aattccatcttgtatctctactattattatgaatgaaatgcaataagttt 5426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 36978777 - 36978842
Alignment:
Q  1 ttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||| |||| ||| || |||||||||||||||||||| |||||||||||| ||||||| |||||||    
T  36978777 ttcatatttatattaggattccatcttgtatctctactattattatgaatgaaatgcaataagttt 36978842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 16007180 - 16007136
Alignment:
Q  22 catcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||||||||| |||||||||||| ||||||| |||||||    
T  16007180 catcttgtatctctactattattatgaatgaaatgcaataagttt 16007136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 4052929 - 4052978
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagtttt 67  Q
    |||||||||| ||||||||| |||||||||||| ||||||| ||| ||||    
T  4052929 attccatcttatatctctaccattattatgaatgaaatgcaataaatttt 4052978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 39861013 - 39861062
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagtttt 67  Q
    |||| ||||||||||||||| |||||||||||  ||||||| ||||||||    
T  39861013 attcaatcttgtatctctactattattatgaaagaaatgcaataagtttt 39861062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 9609554 - 9609506
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||||||||||||| |||||| || || ||||||| |||||||    
T  9609554 attccatcttgtatctctactattattttgtatgaaatgcaataagttt 9609506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 29242160 - 29242112
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    ||||||| |||||||||||| |||||| ||||| ||||||| |||||||    
T  29242160 attccatattgtatctctactattattttgaatgaaatgcaataagttt 29242112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 30796850 - 30796802
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    ||||||||||| |||||||| |||||| ||||| ||||||| |||||||    
T  30796850 attccatcttgcatctctactattattttgaatgaaatgcaataagttt 30796802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 32282895 - 32282847
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||||||||||||| |||||||||||| ||||||| |||||||    
T  32282895 attccatcttgtatctctactattattatgaatgaaatgcaataagttt 32282847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 31037762 - 31037689
Alignment:
Q  8 ttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttttcttatgtaaacaaa 81  Q
    |||||| | ||||||||||||||||||||| |||||| ||||| ||||||| ||| ||| ||| ||| ||||||    
T  31037762 ttttattaaaattccatcttgtatctctactattattttgaatgaaatgcagtaactttacttctgtcaacaaa 31037689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 11503121 - 11503073
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||||||||||||| |||||| ||||| ||||||| |||||||    
T  11503121 attccatcttgtatctctactattattttgaatgaaatgcaataagttt 11503073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 32578138 - 32578186
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||||||||||||| |||||| ||||| ||||||| |||||||    
T  32578138 attccatcttgtatctctactattattttgaatgaaatgcaataagttt 32578186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 5839849 - 5839900
Alignment:
Q  15 agaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||| |||||||||||||||| ||||| |||||| ||||||| |||||||    
T  5839849 agaatttcatcttgtatctctactattatcatgaatgaaatgcaataagttt 5839900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 10631276 - 10631232
Alignment:
Q  22 catcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||| ||| |||||||  |||||||||||||||||||||||||||    
T  10631276 catcatgtgtctctactcttattatgaataaaatgcactaagttt 10631232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 25663592 - 25663640
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||||||||||| | |||||| ||||| ||||||| |||||||    
T  25663592 attccatcttgtatctctcctattattttgaatgaaatgcaataagttt 25663640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 26006831 - 26006771
Alignment:
Q  16 gaattccatcttgtatctctacgattattatgaataaaatgcactaagttttcttatgtaa 76  Q
    ||||||||||||| ||||||||  ||||| | ||| ||||||| ||||||||||| |||||    
T  26006831 gaattccatcttgcatctctactcttattttaaatgaaatgcattaagttttcttttgtaa 26006771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 36531223 - 36531263
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgca 58  Q
    |||||||||||| ||||||| |||||||||||| |||||||    
T  36531223 attccatcttgtttctctactattattatgaatgaaatgca 36531263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 40187446 - 40187494
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||||||||||||| |||||||||||| ||||||| |||||||    
T  40187446 attccatcttgtatctctactattattatgaatgaaatgcaataagttt 40187494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 4595078 - 4595034
Alignment:
Q  22 catcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||||||||| |||||||||||| ||||||| |||||||    
T  4595078 catcttgtatctctactattattatgaatgaaatgcaataagttt 4595034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 8150907 - 8150859
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||||||||||||| |||||||||||| ||||| | |||||||    
T  8150907 attccatcttgtatctctactattattatgaatgaaatgtaataagttt 8150859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 9360829 - 9360877
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||||||||||||| |||||||||||| |||| || |||||||    
T  9360829 attccatcttgtatctctactattattatgaatgaaatacaataagttt 9360877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 25611415 - 25611367
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||||||||||||| |||||| ||||| ||||||| |||||||    
T  25611415 attccatcttgtatctctactattattttgaatgaaatgcaataagttt 25611367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 3962346 - 3962301
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaag 63  Q
    |||||||||||||||||||| |||||| ||||| ||||||| ||||    
T  3962346 attccatcttgtatctctactattattttgaatgaaatgcaataag 3962301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 5866308 - 5866344
Alignment:
Q  22 catcttgtatctctacgattattatgaataaaatgca 58  Q
    |||||||||||||||| |||||||||||| |||||||    
T  5866308 catcttgtatctctactattattatgaatgaaatgca 5866344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 6596233 - 6596281
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||||||| ||||| |||||| ||||| ||||||| |||||||    
T  6596233 attccatcttgtatatctactattattttgaatgaaatgcaataagttt 6596281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 14160551 - 14160599
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    ||||| |||||||||||||| |||||| ||||| ||||||| |||||||    
T  14160551 attccttcttgtatctctactattattttgaatgaaatgcaataagttt 14160599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 23362376 - 23362416
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgca 58  Q
    |||||||||||||||||||| |||||| ||||| |||||||    
T  23362376 attccatcttgtatctctactattattttgaatgaaatgca 23362416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 51952023 - 51952071
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||||||||||||| |||||||||||| ||||||| |||||||    
T  51952023 attccatcttgtatctctactattattatgaatgaaatgcaataagttt 51952071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 8457988 - 8458032
Alignment:
Q  22 catcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||||||||| |||||||||||| ||||||| |||||||    
T  8457988 catcttgtatctctactattattatgaatgaaatgcaataagttt 8458032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 26400263 - 26400311
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    ||||||| |||||||||||| |||||||||||| ||||||| |||||||    
T  26400263 attccatattgtatctctactattattatgaatgaaatgcaataagttt 26400311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 39383539 - 39383587
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    ||||||| |||||||||||| |||||||||||| ||||||| |||||||    
T  39383539 attccattttgtatctctactattattatgaatgaaatgcaataagttt 39383587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 43018407 - 43018367
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgca 58  Q
    |||||||||||||||||||| |||||||||||| |||||||    
T  43018407 attccatcttgtatctctactattattatgaatgaaatgca 43018367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 19396842 - 19396888
Alignment:
Q  16 gaattccatcttgtatctctacgattattatgaataaaatgcactaa 62  Q
    ||||||||||||||||||| || ||||||||||||  ||||||||||    
T  19396842 gaattccatcttgtatctcaacaattattatgaatgtaatgcactaa 19396888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 51191920 - 51191876
Alignment:
Q  22 catcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||||| ||| |||||||||||| ||||||| |||||||    
T  51191920 catcttgtatctgtactattattatgaatgaaatgcaataagttt 51191876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 58488 - 58535
Alignment:
Q  19 ttccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    ||||||||||||||||||| |||||||||||| ||||||| |||||||    
T  58488 ttccatcttgtatctctactattattatgaatgaaatgcaataagttt 58535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 23769830 - 23769779
Alignment:
Q  15 agaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    ||||||| ||||||||||||||| |||||||||||| ||||||| |||||||    
T  23769830 agaattctatcttgtatctctactattattatgaatgaaatgcaataagttt 23769779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 22606005 - 22606045
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgca 58  Q
    |||||||||||||||||||| |||||||||||| |||||||    
T  22606005 attccatcttgtatctctacaattattatgaatgaaatgca 22606045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 10213909 - 10213945
Alignment:
Q  22 catcttgtatctctacgattattatgaataaaatgca 58  Q
    |||||||||||||||| |||||||||||| |||||||    
T  10213909 catcttgtatctctactattattatgaatgaaatgca 10213945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 11616718 - 11616766
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||| ||||||||||||||| |||||| ||||| ||||||| |||||||    
T  11616718 attctatcttgtatctctactattattttgaatgaaatgcaataagttt 11616766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 45086037 - 45085989
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||| ||||||||| |||||||||||| ||||| | |||||||    
T  45086037 attccatcttatatctctactattattatgaatgaaatgaaataagttt 45085989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 303
Target Start/End: Original strand, 6404 - 6446
Alignment:
Q  261 taagaattcatataacgatagaacactgaaattggtatgaata 303  Q
    |||||||||| |||||||||||||||||||| |||||||||||    
T  6404 taagaattcaaataacgatagaacactgaaactggtatgaata 6446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 5364 - 5315
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagtttt 67  Q
    |||||||||||||||||||| ||||| |||||| ||||||| ||||||||    
T  5364 attccatcttgtatctctactattatcatgaatgaaatgcaataagtttt 5315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 7608564 - 7608605
Alignment:
Q  17 aattccatcttgtatctctacgattattatgaataaaatgca 58  Q
    ||||||||||||||||||||| |||||||||||| |||||||    
T  7608564 aattccatcttgtatctctactattattatgaatgaaatgca 7608605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 6192630 - 6192678
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||||||| ||||| ||||| |||||| ||||||| |||||||    
T  6192630 attccatcttgtatttctactattatcatgaatgaaatgcaataagttt 6192678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 7435668 - 7435628
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgca 58  Q
    |||||||||||||||||||| |||||||||||  |||||||    
T  7435668 attccatcttgtatctctactattattatgaacgaaatgca 7435628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 12523681 - 12523717
Alignment:
Q  22 catcttgtatctctacgattattatgaataaaatgca 58  Q
    |||||||||||||||| |||||||||||| |||||||    
T  12523681 catcttgtatctctaccattattatgaatgaaatgca 12523717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 29025284 - 29025240
Alignment:
Q  22 catcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    ||||||||||| |||| |||||||||||| ||||||| |||||||    
T  29025284 catcttgtatcactactattattatgaatgaaatgcaataagttt 29025240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 31798024 - 31797988
Alignment:
Q  22 catcttgtatctctacgattattatgaataaaatgca 58  Q
    |||||||||||||| | ||||||||||||||||||||    
T  31798024 catcttgtatctctgctattattatgaataaaatgca 31797988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 32957525 - 32957573
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||||||||||||| |||||| ||||| ||||||  |||||||    
T  32957525 attccatcttgtatctctactattattttgaatgaaatgcgataagttt 32957573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 34183169 - 34183125
Alignment:
Q  22 catcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||||||||| | |||||||||| ||||||| |||||||    
T  34183169 catcttgtatctctactactattatgaattaaatgcaataagttt 34183125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 6800 - 6848
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||||||||||||| |||||| ||||| ||||||| |||||||    
T  6800 attccatcttgtatctctactattattttgaatgaaatgcaataagttt 6848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 26993 - 26941
Alignment:
Q  15 agaattccatcttgtatctctacgattattatgaataaaatgcactaagtttt 67  Q
    |||||| |||||||||||||| | |||||||||||| ||||||| ||||||||    
T  26993 agaatttcatcttgtatctctgctattattatgaatgaaatgcaataagtttt 26941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 187213 - 187261
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||||||||||||| |||||| ||||| ||||||| |||||||    
T  187213 attccatcttgtatctctactattattttgaatgaaatgcaataagttt 187261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 2251 - 2211
Alignment:
Q  18 attccatcttgtatctctacgattattatgaataaaatgca 58  Q
    |||| ||||||||||||||| |||||||||||| |||||||    
T  2251 attctatcttgtatctctactattattatgaatgaaatgca 2211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 20721 - 20765
Alignment:
Q  22 catcttgtatctctacgattattatgaataaaatgcactaagttt 66  Q
    |||||||||||||||| |||||||| ||| ||||||| |||||||    
T  20721 catcttgtatctctactattattataaatgaaatgcaataagttt 20765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University