View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20474_low_1 (Length: 702)
Name: NF20474_low_1
Description: NF20474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20474_low_1 |
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| [»] chr2 (3 HSPs) |
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| [»] scaffold0257 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 479 - 702
Target Start/End: Original strand, 8022184 - 8022407
Alignment:
| Q |
479 |
tgttgagtatagcttagttctgattttgtacaagtacaaacttcctaaacttttctcaaccaacttctactatacacaccccaccaccaccaattttgaa |
578 |
Q |
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| T |
8022184 |
tgttgagtatagcttagttctgattttgtacaagtacaaacttcctaaacttttctcaaccaacttctactatacacaccccaccaccaccaattttgaa |
8022283 |
T |
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| Q |
579 |
cctaattaattaagctcaggaatactttgtaaaacaggcttccatagcctatgatggacatcatggttgacatgatctctagcatttaacaaaccaacca |
678 |
Q |
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| T |
8022284 |
cctaattaattaagctcaggaatactttgtaaaacaggcttccatagcctatgatggacatcatggttgacatgatctctagcatttagcaaaccaacca |
8022383 |
T |
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| Q |
679 |
aaacatgttcagcagaagcatgtt |
702 |
Q |
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| T |
8022384 |
aaacatgttcagcagaagcatgtt |
8022407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 8021690 - 8021928
Alignment:
| Q |
18 |
cactcaacaggaggtacaaattttacgaacacgggatgaaaggcctttaagtgatcctcttggttattagactannnnnnnncgttgcattcaagttgtt |
117 |
Q |
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| T |
8021690 |
cactcaacaggaggcacaaattttacgaacacgggatg------ctttaagtgatcctcttagttattagactattttttt-cgttgcattcaatttgtt |
8021782 |
T |
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| Q |
118 |
ccctgcttttctttatccttcaatattttatttattgctcggacatacgttcctcattaataaattcatttagctgttcaaaacaattgacaagttatag |
217 |
Q |
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| T |
8021783 |
ccctgcttttctttatccttcaatattttatttattgctcggacatacgttcctcattaataaattcatttagctgttcaaaacaattgacaagttataa |
8021882 |
T |
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| Q |
218 |
atacaaagttttagcggtaattaatctaattaagagaacctatgaa |
263 |
Q |
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| T |
8021883 |
atacaaagttttagcgataattaatctaagtaagagaacctatgaa |
8021928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 269 - 426
Target Start/End: Original strand, 8021974 - 8022131
Alignment:
| Q |
269 |
gaaggtggcagagttcaaacctattaccacatgcttaaaagatttacaccccttaccactttgacaaaatattgttggtaacttaacctaaattttaacc |
368 |
Q |
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| T |
8021974 |
gaaggtggcagagttcaaacctattaccacatgcttaaaagatttacaccccttaccactttgacaaaatattgttggtaacttaacctaaattttaacc |
8022073 |
T |
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| Q |
369 |
tatatacaatcataaaaatatagaaataacacattctcaacctctatatatatcttac |
426 |
Q |
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| T |
8022074 |
tatatacaatcataaaaatatagaaataacacattctcaacctctatatatatcttac |
8022131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 19953 - 20094
Alignment:
| Q |
18 |
cactcaacaggaggtacaaattttacgaacacgggatgaaaggcctttaagtgatcctcttggttattagactannnnnnnncgttgcattcaagttgtt |
117 |
Q |
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| T |
19953 |
cactcaacaagaggcacaaattttacaaactcggggtg------ctttaagtgatcctattggttattaaactattttttttcgttgcattctagcagtt |
20046 |
T |
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| Q |
118 |
ccctgcttttctttatccttcaatattttatttattgctcggacatac |
165 |
Q |
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| T |
20047 |
ccctgattttctttatccttgaatattttatttattgctcgaacatac |
20094 |
T |
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