View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20474_low_10 (Length: 316)
Name: NF20474_low_10
Description: NF20474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20474_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 8 - 291
Target Start/End: Complemental strand, 27318955 - 27318672
Alignment:
| Q |
8 |
cgaagaatattaaaccagcaaggacaatcgtgtaacgtcgaccaatccagtcagaaagtctccctgcaatgtaagaacctatgggagaatataggtttat |
107 |
Q |
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| T |
27318955 |
cgaagaaaattaaaccagcaaggacaatcgtgtaacgtcgaccaatccagtcagaaagtctccctgcaatgtaagaacctatgggagaatataggtttat |
27318856 |
T |
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| Q |
108 |
gatacctaggagaatttcaatttgcacgtctgttactttaaggtctctttttatatagatggctgctccactcatcacaccaatatctgttacaataata |
207 |
Q |
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| T |
27318855 |
gatacctaggagaatttcaatttgcacgtctgttactttaaggtctctttttatatagatggctgctccactcatcacaccaatatctgttacaataata |
27318756 |
T |
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| Q |
208 |
acatcatcaatcacatgattcatctcagaaaaatgctgtagaagttcatattgattgataaaaattgctaaactgttgcacgaa |
291 |
Q |
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| T |
27318755 |
acatcatcaatcacatgattcatctcagaaaaatgctgtagaagttcatattgattgataaaaattgctaaactgttgcacgaa |
27318672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 124 - 195
Target Start/End: Complemental strand, 26152783 - 26152712
Alignment:
| Q |
124 |
tcaatttgcacgtctgttactttaaggtctctttttatatagatggctgctccactcatcacaccaatatct |
195 |
Q |
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| T |
26152783 |
tcaattttcccgtcggatactttaaggtctctttttatgtagattgctgctccactcataacaccaatatct |
26152712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 54348057 - 54348009
Alignment:
| Q |
148 |
aggtctctttttatatagatggctgctccactcatcacaccaatatctg |
196 |
Q |
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| T |
54348057 |
aggtctctttttatgtatatcactgctccactcatcaccccaatatctg |
54348009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 54348183 - 54348143
Alignment:
| Q |
22 |
ccagcaaggacaatcgtgtaacgtcgaccaatccagtcaga |
62 |
Q |
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| T |
54348183 |
ccagcaaggacgatggtgtaacggcgaccaatccagtcaga |
54348143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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