View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20474_low_11 (Length: 302)

Name: NF20474_low_11
Description: NF20474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20474_low_11
NF20474_low_11
[»] chr4 (3 HSPs)
chr4 (17-300)||(6839804-6840087)
chr4 (232-300)||(652912-652980)
chr4 (237-290)||(28031523-28031576)
[»] chr1 (5 HSPs)
chr1 (211-284)||(31592302-31592375)
chr1 (131-186)||(45309101-45309156)
chr1 (238-300)||(33816839-33816901)
chr1 (238-300)||(33876309-33876371)
chr1 (197-260)||(35322353-35322416)
[»] chr6 (1 HSPs)
chr6 (196-241)||(34701311-34701356)
[»] chr2 (3 HSPs)
chr2 (196-241)||(26999276-26999321)
chr2 (238-289)||(16349529-16349580)
chr2 (195-241)||(26423240-26423286)
[»] chr5 (1 HSPs)
chr5 (197-260)||(33305027-33305090)
[»] chr3 (2 HSPs)
chr3 (192-283)||(7514969-7515060)
chr3 (197-260)||(31637603-31637666)


Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 6840087 - 6839804
Alignment:
Q  17 aagtgggtagacgcgggcattggggaggtgtcaggtattctctctgcccttcaatgggtctgtgatcttcaattggtcaatgccgactccaaaatagtag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6840087 aagtgggtagacgcgggcattggggaggtgtcaggtattctctctgcccttcaatgggtctgtgatcttcaattggtcaatgcggactccaaaatagtag 6839988  T
Q  117 tttagaacatctacggtaataagcatggtgtttctgactttagtgcaattatcaatgactacaatcgtctactcgcttctgatttagtgaactctgatat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6839987 tttagaacatctacggtaataagcatggtgtttctgactttagtgcaattatcaatgactacaatcgtctactcgcttctgatttagtgaactctgatgt 6839888  T
Q  217 gaagttcattagaaaacaatccaatgaaattgctcatagtttagatagggtagctccatgtcatgctaattttcacatttttat 300  Q
     ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  6839887 aaagttcattagaagacaatccaatgaaattgctcatagtttagatagggtagctccatgtcatgctagtttccacatttttat 6839804  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 652912 - 652980
Alignment:
Q  232 acaatccaatgaaattgctcatagtttagatagggtagctccatgtcatgctaattttcacatttttat 300  Q
    ||||||||||||| ||||||||||||||| ||||||| ||  ||||||||||  ||| || ||||||||    
T  652912 acaatccaatgaagttgctcatagtttagctagggtaacttaatgtcatgcttgtttccatatttttat 652980  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 28031523 - 28031576
Alignment:
Q  237 ccaatgaaattgctcatagtttagatagggtagctccatgtcatgctaattttc 290  Q
    |||||||| ||| ||||||||||| |||| || ||||||||||||||| |||||    
T  28031523 ccaatgaagttgatcatagtttagctaggataactccatgtcatgctagttttc 28031576  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 211 - 284
Target Start/End: Original strand, 31592302 - 31592375
Alignment:
Q  211 tgatatgaagttcattagaaaacaatccaatgaaattgctcatagtttagatagggtagctccatgtcatgcta 284  Q
    |||| ||| ||| ||||| | |||| |||||||| ||||||||||||||| |||||||||||||||||||||||    
T  31592302 tgatgtgaggtttattaggagacaagccaatgaagttgctcatagtttagctagggtagctccatgtcatgcta 31592375  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 45309101 - 45309156
Alignment:
Q  131 ggtaataagcatggtgtttctgactttagtgcaattatcaatgactacaatcgtct 186  Q
    |||| |||||||||||||||||| |||||||||||||| ||||||| ||| |||||    
T  45309101 ggtattaagcatggtgtttctgattttagtgcaattattaatgactgcaaacgtct 45309156  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 300
Target Start/End: Original strand, 33816839 - 33816901
Alignment:
Q  238 caatgaaattgctcatagtttagatagggtagctccatgtcatgctaattttcacatttttat 300  Q
    ||||||||||||||||||||||| || ||||| | |||||||||||| |||||| | ||||||    
T  33816839 caatgaaattgctcatagtttagttaaggtagattcatgtcatgctagttttcataattttat 33816901  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 300
Target Start/End: Original strand, 33876309 - 33876371
Alignment:
Q  238 caatgaaattgctcatagtttagatagggtagctccatgtcatgctaattttcacatttttat 300  Q
    ||||||||||||||||||||||| || ||||| | |||||||||||| |||||| | ||||||    
T  33876309 caatgaaattgctcatagtttagttaaggtagattcatgtcatgctagttttcataattttat 33876371  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 35322353 - 35322416
Alignment:
Q  197 gatttagtgaactctgatatgaagttcattagaaaacaatccaatgaaattgctcatagtttag 260  Q
    |||||||||||||||||| ||||||||||||| | ||||  |||||   |||||||||||||||    
T  35322353 gatttagtgaactctgatgtgaagttcattaggagacaagtcaatggtgttgctcatagtttag 35322416  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 34701356 - 34701311
Alignment:
Q  196 tgatttagtgaactctgatatgaagttcattagaaaacaatccaat 241  Q
    ||||||||||||||||||| ||||||||||||||| |||| |||||    
T  34701356 tgatttagtgaactctgatttgaagttcattagaagacaaaccaat 34701311  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 26999321 - 26999276
Alignment:
Q  196 tgatttagtgaactctgatatgaagttcattagaaaacaatccaat 241  Q
    ||||||||||||||||||| ||||||||||||||| |||| |||||    
T  26999321 tgatttagtgaactctgatttgaagttcattagaagacaagccaat 26999276  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 289
Target Start/End: Complemental strand, 16349580 - 16349529
Alignment:
Q  238 caatgaaattgctcatagtttagatagggtagctccatgtcatgctaatttt 289  Q
    ||||||| ||||||||||||||||||| |||||| ||| |||||||| ||||    
T  16349580 caatgaagttgctcatagtttagatagagtagcttcatatcatgctagtttt 16349529  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 26423240 - 26423286
Alignment:
Q  195 ctgatttagtgaactctgatatgaagttcattagaaaacaatccaat 241  Q
    |||||||||||||||||||| ||||||||||||| | |||| |||||    
T  26423240 ctgatttagtgaactctgatgtgaagttcattaggagacaagccaat 26423286  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 260
Target Start/End: Complemental strand, 33305090 - 33305027
Alignment:
Q  197 gatttagtgaactctgatatgaagttcattagaaaacaatccaatgaaattgctcatagtttag 260  Q
    |||||||||||||||||| ||||||||||||| | ||||  |||||   |||||||||||||||    
T  33305090 gatttagtgaactctgatgtgaagttcattaggagacaagtcaatggtgttgctcatagtttag 33305027  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 283
Target Start/End: Original strand, 7514969 - 7515060
Alignment:
Q  192 cttctgatttagtgaactctgatatgaagttcattagaaaacaatccaatgaaattgctcatagtttagatagggtagctccatgtcatgct 283  Q
    ||||| ||||||| | |||| |||||| ||| ||||| | ||||  || |||| ||||||||||||||| |||| |||||||| ||||||||    
T  7514969 cttctcatttagtaacctcttatatgaggtttattaggagacaagtcactgaagttgctcatagtttagctaggctagctccacgtcatgct 7515060  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 31637603 - 31637666
Alignment:
Q  197 gatttagtgaactctgatatgaagttcattagaaaacaatccaatgaaattgctcatagtttag 260  Q
    |||||||||||||||||| ||||||||||||| | ||||  |||||   |||||||||||||||    
T  31637603 gatttagtgaactctgatgtgaagttcattaggagacaagtcaatggtgttgctcatagtttag 31637666  T

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