View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20474_low_12 (Length: 274)
Name: NF20474_low_12
Description: NF20474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20474_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 2132478 - 2132729
Alignment:
| Q |
13 |
aaaatgtatacctgcatcaaacctacaataaaagaatagaaagttttaagaaacagttataacatcaactatcaacta------tcatgtacaattacta |
106 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2132478 |
aaaatgtataactgcatcaaacctacaataaaagaatagaaagtgttaagaaacagttataacatcaactatcaactactcctatcatgtacaattacta |
2132577 |
T |
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| Q |
107 |
gataacatgaagcaccaaatggaaggcgccgattttttaattattgttaaagaaacatcagccatactc--tactga-nnnnnnngggtgaaatggccta |
203 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| | ||| ||||||||| ||||| |
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| T |
2132578 |
gataacatgaagcaccaaatggaaggcgcccattttttaattattgttaaagaaacatcagtcatactcaaaaatgattttttttgggtgaaatagccta |
2132677 |
T |
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| Q |
204 |
gtgacgagaatctcacgcattaaatgtggaatcgcgagcgaacccgcacccc |
255 |
Q |
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||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
2132678 |
gtgacgagaatatcacgcattaaatgtggattcgcgagcgaacccgcacccc |
2132729 |
T |
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