View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20474_low_15 (Length: 250)

Name: NF20474_low_15
Description: NF20474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20474_low_15
NF20474_low_15
[»] chr3 (4 HSPs)
chr3 (1-238)||(7198152-7198389)
chr3 (1-228)||(7205087-7205310)
chr3 (93-237)||(7211638-7211782)
chr3 (1-95)||(7211818-7211912)
[»] chr8 (2 HSPs)
chr8 (122-170)||(10354779-10354827)
chr8 (131-167)||(45371058-45371094)
[»] chr6 (3 HSPs)
chr6 (141-209)||(30876585-30876653)
chr6 (131-207)||(2457281-2457357)
chr6 (128-208)||(20868473-20868553)
[»] chr4 (1 HSPs)
chr4 (141-170)||(30617226-30617255)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 7198389 - 7198152
Alignment:
Q  1 attacctacataagcatatgcaataagtccacatcggataacaacagagaagactaaagtgggatgaaaatcaattggcttaaaccagtgttgttccgcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  7198389 attacctacataagcatatgcaataagtccacatcggataacaacagagaagactaaagtgggatgaaaatcaaatggcttaaaccagtgttgatccgcc 7198290  T
Q  101 atacactaacaaaatgttgtcaataacagttataacggcactatagcattgttgcgtagtggaatttgaatgaattgatcttttctatgatctgcgattg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7198289 atacactaacaaaatgttgtcaataacagttataacggcactatagcattgttgcgtagtggaatttgaatgaattgatcttttctatgatctgcgattg 7198190  T
Q  201 acaacacttgtttagaccttttggaccatggaccccta 238  Q
    |||||||||||||||||||||||||||||| |||||||    
T  7198189 acaacacttgtttagaccttttggaccatgaaccccta 7198152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 7205310 - 7205087
Alignment:
Q  1 attacctacataagcatatgcaataagtccacatcggataacaacagagaagactaaagtgggatgaaaatcaattggcttaaaccagtgttgttccgcc 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||| ||||||| |||||||||| ||||||    
T  7205310 attacctacataagcatatgcaataagtccacatctgataacaacaaagaagactaaagtgggatgaagatcaaatggcttagaccagtgttgctccgcc 7205211  T
Q  101 atacactaacaaaatgttgtcaataacagttataacggcactatagcattgttgcgtagtggaatttgaatgaattgatcttttctatgatctgcgattg 200  Q
    |||| ||||||||||||||||||||||||||| | ||| |||  | ||||||||||||   |||||| ||| |||   | ||||||||||||  ||||||    
T  7205210 atacgctaacaaaatgttgtcaataacagttacagcgggacttcaacattgttgcgta---gaatttaaat-aatcactattttctatgatccacgattg 7205115  T
Q  201 acaacacttgtttagaccttttggacca 228  Q
    ||||||||||||||||||||||||||||    
T  7205114 acaacacttgtttagaccttttggacca 7205087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 93 - 237
Target Start/End: Complemental strand, 7211782 - 7211638
Alignment:
Q  93 gttccgccatacactaacaaaatgttgtca-ataacagttataacggcactatagcattgttgcgtagtggaatttgaatgaattgatcttttctatgat 191  Q
    |||||||||||| ||| ||||||||| ||| |||||| ||||| |||||| |||||| ||||||||||||||||||||||||||   | |||| | ||||    
T  7211782 gttccgccatacgctagcaaaatgttatcagataacatttatagcggcacaatagcactgttgcgtagtggaatttgaatgaatcactattttatgtgat 7211683  T
Q  192 ctgcgattgacaacacttgtttagaccttttggaccatggacccct 237  Q
    | |||||| ||||||| |||||||||||||||||||||| ||||||    
T  7211682 ccgcgatttacaacac-tgtttagaccttttggaccatgaacccct 7211638  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 7211912 - 7211818
Alignment:
Q  1 attacctacataagcatatgcaataagtccacatcggataacaacagagaagactaaagtgggatgaaaatcaattggcttaaaccagtgttgtt 95  Q
    ||||||||||||||||||||||||||||| ||||| | ||||||||| |||||||||||  |||||||   |||| || ||| ||||||||||||    
T  7211912 attacctacataagcatatgcaataagtcaacatcaggtaacaacagggaagactaaagcaggatgaagtccaatcggtttagaccagtgttgtt 7211818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 10354827 - 10354779
Alignment:
Q  122 aataacagttataacggcactatagcattgttgcgtagtggaatttgaa 170  Q
    ||||||||||||| |||| |||||||| | |||||||||||||||||||    
T  10354827 aataacagttatagcggctctatagcactattgcgtagtggaatttgaa 10354779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 45371094 - 45371058
Alignment:
Q  131 tataacggcactatagcattgttgcgtagtggaattt 167  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  45371094 tataacggcactatagcactgttgtgtagtggaattt 45371058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 30876653 - 30876585
Alignment:
Q  141 ctatagcattgttgcgtagtggaatttgaatgaattgatcttttctatgatctgcgattgacaacactt 209  Q
    |||||||||||| || ||| | ||||||||| ||| | | |||||| ||||||||||||||||||||||    
T  30876653 ctatagcattgtagcatagcgtaatttgaataaatcgctattttctgtgatctgcgattgacaacactt 30876585  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 2457281 - 2457357
Alignment:
Q  131 tataacggcactatagcattgttgcgtagtggaatttgaatgaattgatcttttctatgatctgcgattgacaacac 207  Q
    |||||| || |||||||||| ||| || ||||||||||||  || || | ||||||  |||||||||||||||||||    
T  2457281 tataacagctctatagcattattgtgtggtggaatttgaacaaactgctattttctgcgatctgcgattgacaacac 2457357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 208
Target Start/End: Complemental strand, 20868553 - 20868473
Alignment:
Q  128 agttataacggcactatagcattgttgcgtagtggaatttgaatgaattgatcttttctatgatctgcgattgacaacact 208  Q
    |||||||||||  || ||||||||| || |||| |||||||||  ||||| | ||||||  ||| ||||||||||||||||    
T  20868553 agttataacggggctgtagcattgtagcctagttgaatttgaagaaattgctattttctgcgatttgcgattgacaacact 20868473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 170
Target Start/End: Complemental strand, 30617255 - 30617226
Alignment:
Q  141 ctatagcattgttgcgtagtggaatttgaa 170  Q
    ||||||||||||||||||||||||||||||    
T  30617255 ctatagcattgttgcgtagtggaatttgaa 30617226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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