View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20474_low_16 (Length: 246)
Name: NF20474_low_16
Description: NF20474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20474_low_16 |
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| [»] chr3 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 111 - 246
Target Start/End: Complemental strand, 34278122 - 34277987
Alignment:
| Q |
111 |
tgaattattatcttaactatcaaatttcagtaattcattttcttatcttgccatgttggtttccaactcaaatcatatttaagataagaattataactac |
210 |
Q |
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| T |
34278122 |
tgaattattatcttaactatcaaatttcagtaattcattttcttatcttgccatgttggtttccaactcaaatcatatttaagatgagaattataactac |
34278023 |
T |
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| Q |
211 |
aaaggcaggacacgataaattccagtattaacttat |
246 |
Q |
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| T |
34278022 |
aaaggtaggacacgataaattccagtattaacttat |
34277987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 34278259 - 34278153
Alignment:
| Q |
12 |
atcaccacaacttcatacttccccttcaaccttaaacaaaaattgtacactgacacaaaccgatctttgaactagcttattaagaaacaaggtggaatat |
111 |
Q |
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| T |
34278259 |
atcaccacaacttcatacttccccttcaaccttaaacaaaaattgtacactgacacaaaccgatctttgaactagcttattaagaaacaaggtggaatat |
34278160 |
T |
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| Q |
112 |
gaattat |
118 |
Q |
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| T |
34278159 |
gaattat |
34278153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 246
Target Start/End: Complemental strand, 5520472 - 5520426
Alignment:
| Q |
200 |
attataactacaaaggcaggacacgataaattccagtattaacttat |
246 |
Q |
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| T |
5520472 |
attataactacaaaggcaggataggataaatttcaggattaacttat |
5520426 |
T |
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