View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20474_low_2 (Length: 563)
Name: NF20474_low_2
Description: NF20474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20474_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 9 - 548
Target Start/End: Complemental strand, 35916210 - 35915671
Alignment:
| Q |
9 |
tgattgttaagaaaaatgcaaagaaagttaacctgggctacaaatcttccatgagtcagcatcacttctagggcttccaaaggaagaagaacgagcccca |
108 |
Q |
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| T |
35916210 |
tgattgttaagaaaaatgcaaagaaagttaacctgggctacaaatcttccatgagtcagcatcacttctagggcttccaaaggaagaagaacgagcccca |
35916111 |
T |
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| Q |
109 |
agggatgaagcacgactttgaggtgtagaaacagggcttggtgacaaacctctattaacagcaaaataaagatcaagggcaggcaatgtattacacaatc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35916110 |
agggatgaagcacgactttgaggtgtagaaacagggcttggtgacaaacctctattaacagcaaaataaagatcaagggcaggcaatgtattacacaatc |
35916011 |
T |
|
| Q |
209 |
tctgaccatcttcttcattgaatccaaacccaagttcaatgcatcctttaagttcatgcaaatcatcatcagttatatcatcacaaacacaatcttgaac |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35916010 |
tctgaccatcttcttcattgaatccaaacccaagttcaatgcatcctttaagttcatgcaaatcatcatcagttatatcatcacaaacacaatcttgaac |
35915911 |
T |
|
| Q |
309 |
aatactcctccttatttcttgtctcctccttctctcccaagccatatctctcggcttctcgcacatcgatagctgcttcgatagcctcctcctattgttc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35915910 |
aatactcctccttatttcttgtctcctccttctctcccaagccatatctctcggcttctcgcacatcgatagctgcttcgatagcctcctcctattgttc |
35915811 |
T |
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| Q |
409 |
cacgccaccggcgccaatggcatgtgctgcaactcctcctctgattcgcttggtagcggagaagaagatgaagataatgacattttgtcacacttttgct |
508 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35915810 |
cacgccaccggcgccaatggcatgtgctgcaactcctcctccgattcgcttggtagcggagaagaagatgaagataatgacattttgtcacacttttgct |
35915711 |
T |
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| Q |
509 |
cttctttgttcatagctacaaataattattgtatatcttt |
548 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
35915710 |
cttctttgttcatagctacaaataattattgtatatcttt |
35915671 |
T |
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