View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20474_low_8 (Length: 326)
Name: NF20474_low_8
Description: NF20474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20474_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 21 - 315
Target Start/End: Complemental strand, 1163109 - 1162809
Alignment:
| Q |
21 |
gtaagcagctaatatgcattggtttgatcttctctgctatgtatatatctgtttcgtaaatcttaaacagttgtttgtttgtggtatagtactacctttt |
120 |
Q |
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| T |
1163109 |
gtaagcagctaatatgcattggtttgatcttctctgctatgtaaatatctgtttcgtaaattttaaacagttgtttgtttgtggtatagtactacctttt |
1163010 |
T |
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| Q |
121 |
atatggattcattccggtgctggatggatgtaaatattttgtggatctgtttttattatattgtttgttataaacaaatagttcactccatttatacttg |
220 |
Q |
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| T |
1163009 |
atatggattcgttcatgtgctggatggatgtaaatattttgtggatctgtttttattatattgtttgttataaacaaatagttcactccatttgtacttg |
1162910 |
T |
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| Q |
221 |
agttttgattaatctaatacctatcgtaccaagaaaaactggcaaaccatct------ttattaggagattttcaactctacataaatagattaaagtat |
314 |
Q |
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| T |
1162909 |
agttttgattaatctaatacctatcatacgaagcaaaactggcaaactatctttataattattaggagattttcaactctacataaatagattaaagtat |
1162810 |
T |
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| Q |
315 |
a |
315 |
Q |
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| T |
1162809 |
a |
1162809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 40418993 - 40419134
Alignment:
| Q |
22 |
taagcagctaatatgcattggtttgatcttctctgctatgtatatatctgtttcgtaaatcttaaacagttgtttgtttgtggtatagtactacctttta |
121 |
Q |
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| T |
40418993 |
taagcagctaatatgcattggttcgatcttctctgctacgtaaatatctgtttcataaatctttaacagttatttgta----gtatcgtattacctttta |
40419088 |
T |
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| Q |
122 |
tatggattcattccggtgctggatggatgtaaatattttgtggatctgtt |
171 |
Q |
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| T |
40419089 |
tattgattaattcctgtgctgaattg----aaatattttgtggatctgtt |
40419134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 285
Target Start/End: Original strand, 40412251 - 40412347
Alignment:
| Q |
189 |
tataaacaaatagttcactccatttatacttgagttttgattaatctaatacctatcgtaccaagaaaaactggcaaaccatctttattaggagatt |
285 |
Q |
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|||||| ||||||||||||| |||| | |||||||| ||||||||||| || ||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
40412251 |
tataaataaatagttcactctatttgttcttgagttctgattaatctactaagtatcgtaagaagcaaaactggcaaaccatctttattaggagatt |
40412347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 39400652 - 39400711
Alignment:
| Q |
176 |
ttatattgtttgttataaacaaatagttcactccatttatacttgagttttgattaatct |
235 |
Q |
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| T |
39400652 |
ttatattgtttgttataaataaatggttcactctatttctacttgagctttgattaatct |
39400711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 285
Target Start/End: Original strand, 40419145 - 40419234
Alignment:
| Q |
196 |
aaatagttcactccatttatacttgagttttgattaatctaatacctatcgtaccaagaaaaactggcaaaccatctttattaggagatt |
285 |
Q |
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| T |
40419145 |
aaatagtttactctttttggacttgagctttgattaatctattacatacactaagaagtaaaactagcaaaccatctttattaggagatt |
40419234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 22 - 176
Target Start/End: Complemental strand, 25911629 - 25911483
Alignment:
| Q |
22 |
taagcagctaatatgcattggtttgatcttctctgctatgtatatatctgtttcgtaaatcttaaacagttgtttgtttgtggtatagtactacctttta |
121 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| |||| ||| ||||||||| |
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| T |
25911629 |
taagcagctaatatacattggtttgatcttctctgctatgtaaatatctgtttcataaatctttaacagttgtttgta----gtatcgtattacctttta |
25911534 |
T |
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| Q |
122 |
tatggattcattccggtgctggatggatgtaaatattttgtggatctgtttttat |
176 |
Q |
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|||||||||||||| ||||||||| | |||||||||| ||||||||| |||| |
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| T |
25911533 |
tatggattcattcctgtgctggattg----aaatattttggggatctgttattat |
25911483 |
T |
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