View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20475_high_5 (Length: 360)
Name: NF20475_high_5
Description: NF20475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20475_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 348
Target Start/End: Complemental strand, 2324621 - 2324291
Alignment:
| Q |
18 |
ggtatcttttctgtattttcgttaaaggtatgttcaaagtcataactgctagtgtagcagctaatgcagccaatgaacctaatccaagatttgtctgcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2324621 |
ggtatcttttctgtattttcgttaaaggtatgttcaaagtcataactgctagtgtagcagctaatgcagccaatgaacctaatccaagatttgtctgcaa |
2324522 |
T |
|
| Q |
118 |
aatgataacagctaaggaaatttgtatcggcagcatccaaataacatttacataccaaacgaaatccgtaatcctctgcacatctacactcatgtagttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2324521 |
aatgataacagctaaggaaatttgtatcggcagcatccaaataacatttacataccaaacgaaatccgtaatcctctgcacatctacactcatgtagttc |
2324422 |
T |
|
| Q |
218 |
attatctcaccaccagaatgactttgacgcgatcggcttgacagatgtaagcccttcttgtatacatgtgatatcaatgcggcccttaggcggaggccta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2324421 |
attatctcaccaccagaatgactttgacgcgatcggcttgacagatgtaagcccttcttgtatacatgtgatatcaatgcggcccttaggcggaggccta |
2324322 |
T |
|
| Q |
318 |
attgccgagcaccgaaaatccattgcctctg |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
2324321 |
attgccgagcaccgaaaatccattgcctctg |
2324291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 348
Target Start/End: Complemental strand, 2300402 - 2300072
Alignment:
| Q |
18 |
ggtatcttttctgtattttcgttaaaggtatgttcaaagtcataactgctagtgtagcagctaatgcagccaatgaacctaatccaagatttgtctgcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2300402 |
ggtatcttttctgtattttcgttaaaggtatgttcaaagtcataactgctagtgtagcagctaatgcagccaatgaacctaatccaagatttgtctgcaa |
2300303 |
T |
|
| Q |
118 |
aatgataacagctaaggaaatttgtatcggcagcatccaaataacatttacataccaaacgaaatccgtaatcctctgcacatctacactcatgtagttc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2300302 |
aatgataacagctaaggaaatttgtatcggcagcatccaaataacgtttacataccaaacgaaatccgtaatcctctgcacatctacactcatgtagttc |
2300203 |
T |
|
| Q |
218 |
attatctcaccaccagaatgactttgacgcgatcggcttgacagatgtaagcccttcttgtatacatgtgatatcaatgcggcccttaggcggaggccta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2300202 |
attatctcaccaccagaatgactttgacgcgatcggcttgacagatgtaagcccttcttgtatacatgtgatatcaatgcggcccttaggcggaggccta |
2300103 |
T |
|
| Q |
318 |
attgccgagcaccgaaaatccattgcctctg |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
2300102 |
attgccgagcaccgaaaatccattgcctctg |
2300072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University