View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20475_high_6 (Length: 343)
Name: NF20475_high_6
Description: NF20475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20475_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 11 - 333
Target Start/End: Original strand, 33601687 - 33602009
Alignment:
| Q |
11 |
taacatacttttttgtttggtaggaagcttctaacaaattagacatcaaattattaaaagtgattgcacatgcattagtacatgtggaagcatgaatata |
110 |
Q |
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| T |
33601687 |
taacatacttttttgtttggtaggaagcttctaacaaattagacatcaaattattaaaagtgattgcacatgcattaatacatgtggaagcatgaatata |
33601786 |
T |
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| Q |
111 |
ttacaaatacttggtctatgcccatatatatttgacaaatatgtgatattgatatgatatctcactccacactaaaccaccaccaagttccaaactccat |
210 |
Q |
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| T |
33601787 |
ttacaaatacttggtctatgcccatatatatttgacaaatatttgatattgatatgatatctcactccacactaaaccaccaccaagttccaaactccat |
33601886 |
T |
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| Q |
211 |
gatgtggtttagaaagaagagccattcgtgtgggtctttcttgaggggtccttaaaattacaatattcaaccccacgtttatcttttcttccattccata |
310 |
Q |
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| T |
33601887 |
gatgtggtttagaaagaagagccattcgtgtgggtctttcttgaggggtccttaaaattacaatattcaaccccacgtttatcttttcttccattccata |
33601986 |
T |
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| Q |
311 |
accctactcttctctccctctct |
333 |
Q |
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| T |
33601987 |
accctactcttctctccctctct |
33602009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 296
Target Start/End: Original strand, 33588794 - 33588850
Alignment:
| Q |
241 |
tgggtctttcttgaggggtcctt-aaaattacaatattcaaccccacgtttatcttt |
296 |
Q |
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| T |
33588794 |
tgggtctttcttgaggggtccttgacaattacaagattcattcccacgtttttcttt |
33588850 |
T |
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