View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20475_high_7 (Length: 306)
Name: NF20475_high_7
Description: NF20475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20475_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 289
Target Start/End: Complemental strand, 23983408 - 23983120
Alignment:
| Q |
8 |
agagatgaagagggcatgataactgaatggaaaaagaatttgtattagctatcaaaaagaatttcacaatgtctgataccaaataatacaaagtaactat |
107 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
23983408 |
agagctgaagagggcatgataactgaaaggaaaaagaatttgtattagctatcaaaaagaatttcacaatgtttgataccaaataatacaatgtaactat |
23983309 |
T |
|
| Q |
108 |
gt-------tagtgcacttacttttatcaccattttccagaattggctgcaaaatagaaaaatcagaagtaagaaccagagtattgagttttgaggtttg |
200 |
Q |
| |
|
|| |||||| ||||||||||||||| ||||||||| |||||||||| | |||||||||||||||||| | ||||||||||| |||||||||||| |
|
|
| T |
23983308 |
gtaaggtgttagtgcgcttacttttatcaccgttttccagagttggctgcaagaaagaaaaatcagaagtaagtatcagagtattgaattttgaggtttg |
23983209 |
T |
|
| Q |
201 |
aaataggcatacactttagattgaaaatgtgtctagagtacaactatgcttgagaccggtcgagactgacatatatatgtacaaggaat |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23983208 |
aaataggcatacactttagattgaaaatgtgtctagagtacaactatgcttgagaccggtcgagactgacatatatatgtacaaggaat |
23983120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 8 - 232
Target Start/End: Complemental strand, 23990096 - 23989869
Alignment:
| Q |
8 |
agagatgaagagggcatgataactgaatggaaaaagaatttgtattagctatcaaaaagaatttcacaatgtctgataccaaataatacaaagtaacta- |
106 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
23990096 |
agagctgaagagggcatgataactgaaaggaaaaagaatttgtattagctgtcaaaaagaatttcacaatgtttgataccaaataatacaatgtaactat |
23989997 |
T |
|
| Q |
107 |
------tgttagtgcacttacttttatcaccattttccagaattggctgcaaaatagaaaaatcagaagtaagaaccagagtattgagttttgaggtttg |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||| | |||||||| ||||||||||| |
|
|
| T |
23989996 |
gtaaggtgttagtgcacttacttttatcaccgttttccagagttggctgcaaa--agaaaaatcagaagtaagaatc--agtattgaattttgaggtttt |
23989901 |
T |
|
| Q |
201 |
aaataggcatacactttagattgaaaatgtgt |
232 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| |
|
|
| T |
23989900 |
aaataggcatatactttagattgaacatgtgt |
23989869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 23966358 - 23966187
Alignment:
| Q |
8 |
agagatgaagagggcatgataactgaatggaaaaagaatttgtattagctatcaaaaagaatttcacaatgtctgataccaaataatacaaagtaa-cta |
106 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| ||| |
|
|
| T |
23966358 |
agagctgaagagggcatgataactgaaaggaaaaagaatttgtattagctatcaaaa----tttcacaatgtttgataccaaataatacaatgtaaacta |
23966263 |
T |
|
| Q |
107 |
tgt-------tagtgcacttacttttatcaccattttccagaattggctgcaaaatagaaaaatcagaagtaagaa |
175 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23966262 |
tgtaaggtgttagtgcacttacttttatcaccattttccagaattggctgcaaaatagaaaaatcagaagtaagaa |
23966187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University