View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20475_low_1 (Length: 529)
Name: NF20475_low_1
Description: NF20475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20475_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 495; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Original strand, 31739092 - 31739602
Alignment:
| Q |
1 |
tggaagatatatataacaatgcccaaagatttatgtgacacttatggtctttgtggaccttatggaaattgcatgatgacccaacaacaggtctgtcaat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31739092 |
tggaagatatatataacaatgcccaaagatttatgtgacacttatggtctttgtggaccttatggaaattgcatgatgacccaacaacaggtctgtcaat |
31739191 |
T |
|
| Q |
101 |
gtttcaatggttttagtccaaagtcaccgcaagcatggatagcatctgattggagtcaaggatgtgtgcgcgataaacatttgagttgcaatcataatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31739192 |
gtttcaatggttttagtccaaagtcaccgcaagcatggatagcatctgattggagtcaaggatgtgtgtgcgataaacatttgagttgcaatcataatca |
31739291 |
T |
|
| Q |
201 |
cacaaataaagatggatttgtcaaatttcaaggccttaaagttccagatacaacacatacttggttgaatgttagtatgactcttgatgaatgcagaaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31739292 |
cacaaataaagatggatttgtcaaatttcaaggccttaaagttccagatacaacacatacttggttgaatgttagtatgactcttgatgaatgcagaaga |
31739391 |
T |
|
| Q |
301 |
aagtgtttgaccaattgttcttgtatggcttatacaaattctaacataagtggagaaggaagtggttgcgttatgtggtttaatgatctaattgacataa |
400 |
Q |
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|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31739392 |
aagtgtttgaccacttgttcttgtatggcttatacaaattctaacataagtggagaagggagtggttgcgttatgtggtttaatgatctaattgacataa |
31739491 |
T |
|
| Q |
401 |
gacagtttcaagaaggtggacaagatctctatattcggatgcttggttcagagttaggtaatggcttagttattattgtttctgagatttgattttagat |
500 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31739492 |
gacagtttcaagaaggtggacaagatctctatattcagatgcttggttcagagttaggtaatggcttagttattattgtttctgagatttgattttagat |
31739591 |
T |
|
| Q |
501 |
atgataattca |
511 |
Q |
| |
|
||||||||||| |
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| T |
31739592 |
atgataattca |
31739602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 31731430 - 31731890
Alignment:
| Q |
1 |
tggaagatatatataacaatgcccaaagatttatgtgacacttatggtctttgtggaccttatggaaattgcatgatgacccaacaacaggtctgtcaat |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31731430 |
tggaagatatatataacaatgcctaaagacttatgtgacagttatggtctttgtggaccttatggaaattgcatgatgacccaacaacaggtttgtcaat |
31731529 |
T |
|
| Q |
101 |
gtttcaatggttttagtccaaagtcaccgcaagcatggatagcatctgattggagtcaaggatgtgtgcgcgataaacatttgagttgcaatcataatca |
200 |
Q |
| |
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|||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31731530 |
gttttaatggttttagtccaaagtcaccacaagcatggattgcatctgattggagtcaaggatgtgtgcgcgataaacatttgagttgcaatcgcaatca |
31731629 |
T |
|
| Q |
201 |
cacaaataaagatggatttgtcaaatttcaaggccttaaagttccagatacaacacatacttggttgaatgttagtatgactcttgatgaatgcagaaga |
300 |
Q |
| |
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||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| ||||| | |||| ||||||||| | |
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| T |
31731630 |
cacaaataaagatgggtttgtcaaatttcaaggcctaaaagttccagatactacacatactttgttgaatgttactatgagtattgaggaatgcagagaa |
31731729 |
T |
|
| Q |
301 |
aagtgtttgaccaattgttcttgtatggcttatacaaattctaacataagtggagaaggaagtggttgcgttatgtggtttaatgatctaattgacataa |
400 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||| ||||||||||||||||| |
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| T |
31731730 |
aaatgtttgaacaattgttcttgtatggcttatacaaattcaaacataagtggagaagggagcggttgtgttatgtggtttggtgatctaattgacataa |
31731829 |
T |
|
| Q |
401 |
gacagtttcaagaaggtggacaagatctctatattcggatgcttggttcagagttaggtaa |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| |
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|
| T |
31731830 |
gacagtttcaagaaggtggacaagatctctatattcggatgtttggtgcagagctaggtaa |
31731890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 31744331 - 31744791
Alignment:
| Q |
1 |
tggaagatatatataacaatgcccaaagatttatgtgacacttatggtctttgtggaccttatggaaattgcatgatgacccaacaacaggtctgtcaat |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31744331 |
tggaagatatatataacaatgcctaaagacttatgtgacagttatggtctttgtggaccttatggaaattgcatgatgacccaacaacaggtttgtcaat |
31744430 |
T |
|
| Q |
101 |
gtttcaatggttttagtccaaagtcaccgcaagcatggatagcatctgattggagtcaaggatgtgtgcgcgataaacatttgagttgcaatcataatca |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
31744431 |
gttttaatggttttagtccaaagtcaccacaagcatggattgcatctgattggagtcaaggatgtgtgcgcgataaacatttgagttgcaatcgcaatca |
31744530 |
T |
|
| Q |
201 |
cacaaataaagatggatttgtcaaatttcaaggccttaaagttccagatacaacacatacttggttgaatgttagtatgactcttgatgaatgcagaaga |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| ||||| | |||| ||||||||| | |
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| T |
31744531 |
cacaaataaagatgggtttgtcaaatttcaaggcctaaaagttccagatactacacatactttgttgaatgttactatgagtattgaggaatgcagagaa |
31744630 |
T |
|
| Q |
301 |
aagtgtttgaccaattgttcttgtatggcttatacaaattctaacataagtggagaaggaagtggttgcgttatgtggtttaatgatctaattgacataa |
400 |
Q |
| |
|
|| ||||| | |||||||||||||||||||||| ||||||| |||||||||||| |||| ||||| || |||||||||||| ||||||||||||||||| |
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|
| T |
31744631 |
aaatgttttagcaattgttcttgtatggcttattcaaattccaacataagtggaaaagggagtggctgtgttatgtggtttggtgatctaattgacataa |
31744730 |
T |
|
| Q |
401 |
gacagtttcaagaaggtggacaagatctctatattcggatgcttggttcagagttaggtaa |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| |
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|
| T |
31744731 |
gacagtttcaagaaggtggacaagatctctatattcggatgtttggtgcagagctaggtaa |
31744791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 313 - 395
Target Start/End: Original strand, 31701198 - 31701280
Alignment:
| Q |
313 |
aattgttcttgtatggcttatacaaattctaacataagtggagaaggaagtggttgcgttatgtggtttaatgatctaattga |
395 |
Q |
| |
|
|||||||| || ||||| ||||||||| | || |||||||||| |||||||||||| |||||||||||| |||| ||||||| |
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|
| T |
31701198 |
aattgttcatgcatggcctatacaaatacaaatataagtggagcaggaagtggttgtgttatgtggtttggtgatttaattga |
31701280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 434
Target Start/End: Original strand, 31705976 - 31706097
Alignment:
| Q |
313 |
aattgttcttgtatggcttatacaaattctaacataagtggagaaggaagtggttgcgttatgtggtttaatgatctaattgacataagacagtttcaag |
412 |
Q |
| |
|
||||||||||||| |||| || ||||| ||||||||||| | || ||||| || || ||||||||| ||||||||||||||||||||| ||| | |
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|
| T |
31705976 |
aattgttcttgtacagctttcactaattcagacataagtggaaagggcagtggctgtgtcatgtggtttggtgatctaattgacataagacaatttgaca |
31706075 |
T |
|
| Q |
413 |
aaggtggacaagatctctatat |
434 |
Q |
| |
|
||||| |||||||||||||| |
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|
| T |
31706076 |
ctggtggtcaagatctctatat |
31706097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 381
Target Start/End: Original strand, 31716506 - 31716574
Alignment:
| Q |
313 |
aattgttcttgtatggcttatacaaattctaacataagtggagaaggaagtggttgcgttatgtggttt |
381 |
Q |
| |
|
|||||||| || ||||| ||||||||| | || |||||||| | |||||||||||| |||||||||||| |
|
|
| T |
31716506 |
aattgttcatgcatggcatatacaaatacaaatataagtggcgcaggaagtggttgtgttatgtggttt |
31716574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 381
Target Start/End: Original strand, 31722380 - 31722448
Alignment:
| Q |
313 |
aattgttcttgtatggcttatacaaattctaacataagtggagaaggaagtggttgcgttatgtggttt |
381 |
Q |
| |
|
|||||||| || ||||| ||||||||| | || |||||||| | |||||||||||| |||||||||||| |
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|
| T |
31722380 |
aattgttcatgcatggcatatacaaatacaaatataagtggcgcaggaagtggttgtgttatgtggttt |
31722448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 408
Target Start/End: Original strand, 31695509 - 31695604
Alignment:
| Q |
313 |
aattgttcttgtatggcttatacaaattctaacataagtggagaaggaagtggttgcgttatgtggtttaatgatctaattgacataagacagttt |
408 |
Q |
| |
|
||||||||||||| |||| || ||||| ||||||||||| | || ||||| || || ||||||||| ||||||||| ||||||||||||||| |
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|
| T |
31695509 |
aattgttcttgtacagctttcactaattcagacataagtggaaagggtagtggctgtgtcatgtggtttggtgatctaatcgacataagacagttt |
31695604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 380
Target Start/End: Original strand, 31723754 - 31723818
Alignment:
| Q |
316 |
tgttcttgtatggcttatacaaattctaacataagtggagaaggaagtggttgcgttatgtggtt |
380 |
Q |
| |
|
||||| || ||||||||||||||| | || |||||||||| | | |||||||| ||||||||||| |
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|
| T |
31723754 |
tgttcctgcatggcttatacaaatacaaatataagtggagcacggagtggttgtgttatgtggtt |
31723818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 313 - 395
Target Start/End: Complemental strand, 23562092 - 23562010
Alignment:
| Q |
313 |
aattgttcttgtatggcttatacaaattctaacataagtggagaaggaagtggttgcgttatgtggtttaatgatctaattga |
395 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||| |||||||| ||||| || || ||||||||| |||| ||||||| |
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|
| T |
23562092 |
aattgttcttgtacggcttatactaattctaacataaccggagaaggcagtggctgtgtcatgtggtttggtgatttaattga |
23562010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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