View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20475_low_4 (Length: 372)
Name: NF20475_low_4
Description: NF20475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20475_low_4 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 41 - 220
Target Start/End: Complemental strand, 22016927 - 22016749
Alignment:
| Q |
41 |
cttgtgaactgtattccaaactcaaagtcattgttattgcatttacttcaagataagtgtgtcataaacacataacttggcctttaaatacaagtaccaa |
140 |
Q |
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| T |
22016927 |
cttgtgaactgtattccaaactcaaagtcattgttattgcatttacttcaagataagtgtgtcataaacacataacttggcctttaaatacaagtaccaa |
22016828 |
T |
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| Q |
141 |
gaacaaagaaggaatcatttcttcattgtatcggtttagtttgttcctaaaccttaaaaagataatgagagggacacaaa |
220 |
Q |
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| T |
22016827 |
gaacaaagaaggaatca-ttcttcattgtattggtttagtttgttcctaaaccttaaaaagataatgagagggacacaaa |
22016749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 276 - 372
Target Start/End: Complemental strand, 22016693 - 22016597
Alignment:
| Q |
276 |
caatgttacctatgatcatagagcattggtcattgatggtaaacgcagggttcttatgtctggttccattcattatcctcgtagcactcctcaggtt |
372 |
Q |
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| T |
22016693 |
caatgttacctatgatcatagagcattggtcattgatggtaaacgcagggttcttatgtctggttccattcattatcctcgtagcactcctcaggtt |
22016597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 286 - 372
Target Start/End: Original strand, 40084890 - 40084976
Alignment:
| Q |
286 |
tatgatcatagagcattggtcattgatggtaaacgcagggttcttatgtctggttccattcattatcctcgtagcactcctcaggtt |
372 |
Q |
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| T |
40084890 |
tatgatcatagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactaccctcgtagtactccacaggtt |
40084976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 286 - 372
Target Start/End: Original strand, 40058952 - 40059038
Alignment:
| Q |
286 |
tatgatcatagagcattggtcattgatggtaaacgcagggttcttatgtctggttccattcattatcctcgtagcactcctcaggtt |
372 |
Q |
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| T |
40058952 |
tatgaccatagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactaccctcgtagtactccacaggtt |
40059038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 286 - 372
Target Start/End: Original strand, 40076966 - 40077052
Alignment:
| Q |
286 |
tatgatcatagagcattggtcattgatggtaaacgcagggttcttatgtctggttccattcattatcctcgtagcactcctcaggtt |
372 |
Q |
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| T |
40076966 |
tatgaccatagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactaccctcgtagtactccacaggtt |
40077052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 334 - 371
Target Start/End: Original strand, 40097577 - 40097614
Alignment:
| Q |
334 |
tctggttccattcattatcctcgtagcactcctcaggt |
371 |
Q |
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| T |
40097577 |
tctggttcaattcattatcctcgtagcactcctcaggt |
40097614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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