View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20476_high_1 (Length: 337)
Name: NF20476_high_1
Description: NF20476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20476_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 43288390 - 43288598
Alignment:
| Q |
17 |
caaaatccttgtaaatctctctaagttgttccaattagaatcatgttgacaagaataaaagatccgaatttctttgttgtttccatcaaaggcaatataa |
116 |
Q |
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| T |
43288390 |
caaaatccttgtaaatctctctaagttgtgccaattagaatcatgttgacaagaataaaagatccgaatttctttgttgtttccatcaaaggcaatataa |
43288489 |
T |
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| Q |
117 |
gcaaatattaaaacctaacaagtatactttaaatgcatatgtcgttgactagtgtgtttttattcaaaaatatgatccacatatgcaaaatgtattgaca |
216 |
Q |
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| T |
43288490 |
gcaaatattaaaacctaacaagtatactttaaatgcatatgtcgttgactagtgtgtttttattcaaaaatatgatccacatatgcaaaatgtattgaca |
43288589 |
T |
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| Q |
217 |
tcatgaagg |
225 |
Q |
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||||||||| |
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| T |
43288590 |
tcatgaagg |
43288598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 265 - 327
Target Start/End: Original strand, 43288638 - 43288700
Alignment:
| Q |
265 |
agattatttcttctcttaattataatatattggtcacacatatggaaatctaggtatagaata |
327 |
Q |
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| T |
43288638 |
agattatttcttctcttaattataatatattggtcacacatatggaaatctaggtatagaata |
43288700 |
T |
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