View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20476_high_2 (Length: 452)
Name: NF20476_high_2
Description: NF20476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20476_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 52926220 - 52925784
Alignment:
| Q |
1 |
tgttgctgctgaaaccaacccacaggatgctcccgttccaccctgcatttccactcttgaaggtggtcttgttcaacttgctattgaagttgaggatcgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52926220 |
tgttgctgctgaaaccaacccacaggatgctcccgttccaccctgcatttccactcttgaaggtggtcttgttcaacttgctattgaagttgaagatcgt |
52926121 |
T |
|
| Q |
101 |
gctcaccgctccgcaatcaccagagtaaatgctgatgatgttcgtgtcactgtagctgctcctgctgctcgtggagaagctaacaatgaacttttggagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52926120 |
gctcaccgctccgcaatcaccagagtaaatgctgatgatgttcgtgtcactgtagctgctcctgctgctcgtggagaagctaacaatgaacttttggagt |
52926021 |
T |
|
| Q |
201 |
ttatgggaaaggttttaggtttaagattgagtcaaatgactcttcagagaggatggaataacaagtcaaagcttcttgtggtcagtcatgtcttcttcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52926020 |
ttatgggaaaggttttaggtttaagattgagtcaaatgactcttcagagaggatggaataacaagtcaaagcttcttgtggtcagtcatgtcttcttcaa |
52925921 |
T |
|
| Q |
301 |
cttaaccaagtagtaagtatttctcaacaaacatatatactaacgctaattttcaccatcatttcaggtggaggatctcactgctagacaagtttatgag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52925920 |
cttaaccaagtagtaagtatttctcaacaaacatatatactaatgctaattttcaccatcatttcaggtggaggatctcactgctagacaagtttatgag |
52925821 |
T |
|
| Q |
401 |
aaacttttggaggctgtgcaaccttgatgatgtccat |
437 |
Q |
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||||||||||||||||||||||||||||| ||||||| |
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| T |
52925820 |
aaacttttggaggctgtgcaaccttgatgctgtccat |
52925784 |
T |
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