View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20476_high_8 (Length: 361)
Name: NF20476_high_8
Description: NF20476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20476_high_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 3 - 361
Target Start/End: Original strand, 52126999 - 52127357
Alignment:
| Q |
3 |
agcagcaccacagagccagtcccacatcttgacttttggtactataatctcacccgattcgtattcatgaaacaatctcattatttcggtgtttcccaag |
102 |
Q |
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| T |
52126999 |
agcaacacaacacagccagtcccacatcttgacttttggtactataatctcacccgattcgtattcatgaaacaatctcattatttcggtgtttcccaag |
52127098 |
T |
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| Q |
103 |
aaaccctccaattcatttcaatttccgcttaattcaaacgcgcttaattcttcttcgaatctctgcacaaacaaatggtttcgtacatgaacattctact |
202 |
Q |
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| T |
52127099 |
aaaccctccaattcatttcaatttccgcttaatccaaacgcgcttaattcttcttcgaatctctgcacaaacaaatggtttcgtacatgaacattctact |
52127198 |
T |
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| Q |
203 |
ctacggcgtcggaggcttagtcgtcgccggcatggcattgctcgtcgcgtttcaggagaagcttgtttacgttccggtcttaccaggtctcaccaaatcc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52127199 |
ctacggcgtcggaggcttagtcgtcgccggcatggcattgctcgtcgcgtttcaggagaagcttgtttacgttccggtcttaccaggtctcaccaaatcc |
52127298 |
T |
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| Q |
303 |
tacgctatcactccttctcgtctcagactcacctatgaagatatccggctttcttcttc |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
52127299 |
tacgctatcactccttctcgtctcagactcacctatgaagatatctggctttcttcttc |
52127357 |
T |
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