View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20477_high_10 (Length: 423)
Name: NF20477_high_10
Description: NF20477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20477_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 175 - 406
Target Start/End: Complemental strand, 6024970 - 6024742
Alignment:
| Q |
175 |
aattaattgaagatgttgttgaacataagacttacgatcttgggagcagttatacaagtcactaggtaagccattaattgtggatgcatttgattcctct |
274 |
Q |
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| T |
6024970 |
aattaattgaagatgttgttgaacataagacttacgatcttgggagcagttatataagtcactaggtaagccattaattgtggatgcatttgattcctct |
6024871 |
T |
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| Q |
275 |
ggagggttacccgtatctgttgcatttctctcaacttcttcaacattagcattccaccactcccctgcaatttaatttatgatatataagtacaaattgt |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
6024870 |
ggagggttacccgtatctgttgcatttctctcaacttcttcaacattagcattccaccactcccctgcaatttaa-ttatgatatataagtacaaat--t |
6024774 |
T |
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| Q |
375 |
gcttagaataattttaaagagatgtccaataa |
406 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
6024773 |
gcttagaataattttaaagagatgtccaataa |
6024742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 6025167 - 6024990
Alignment:
| Q |
14 |
caaattaaatagaacctaagtttattgtgaaagaaagcacatagtcatttggataaagattggatgacttgtgttgtgctttaactttaaaacacatttt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6025167 |
caaattaaatagaacctaagtttattgtgaaagaaagcacatagtcatttggataaagattggatgacttgtgttgtgctttaactttaaaacacatttt |
6025068 |
T |
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| Q |
114 |
gagatactaatcatccaatttcttctactaaaatagattcactataacacccaaatttgttaattaattgaagatgtt |
191 |
Q |
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| T |
6025067 |
gagatactaatcatccaatttcttctactaaaatagattcactataacacccaaatttgttaattaattgaagatgtt |
6024990 |
T |
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