View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20477_high_13 (Length: 408)

Name: NF20477_high_13
Description: NF20477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20477_high_13
NF20477_high_13
[»] chr5 (5 HSPs)
chr5 (239-399)||(15216325-15216485)
chr5 (20-171)||(15216553-15216704)
chr5 (24-105)||(8151133-8151215)
chr5 (55-168)||(23418414-23418528)
chr5 (54-170)||(33793081-33793198)
[»] chr4 (3 HSPs)
chr4 (24-170)||(54273444-54273592)
chr4 (31-117)||(10777940-10778027)
chr4 (43-113)||(35232874-35232945)
[»] chr3 (1 HSPs)
chr3 (24-123)||(32072982-32073081)
[»] chr6 (2 HSPs)
chr6 (24-125)||(6267418-6267520)
chr6 (24-171)||(15837209-15837356)
[»] chr2 (1 HSPs)
chr2 (24-93)||(16638427-16638496)
[»] chr8 (4 HSPs)
chr8 (29-170)||(45366779-45366922)
chr8 (102-170)||(11219469-11219537)
chr8 (24-105)||(35687916-35687998)
chr8 (54-125)||(13325747-13325819)
[»] chr7 (1 HSPs)
chr7 (27-84)||(20482887-20482945)
[»] chr1 (4 HSPs)
chr1 (69-170)||(26344569-26344671)
chr1 (24-61)||(33770146-33770183)
chr1 (50-114)||(50311133-50311198)
chr1 (102-171)||(25559532-25559601)


Alignment Details
Target: chr5 (Bit Score: 128; Significance: 5e-66; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 239 - 399
Target Start/End: Complemental strand, 15216485 - 15216325
Alignment:
Q  239 acaccgttaatttaactccannnnnnncaagtttaatcaattttaacgtgaaagcttggaagtttttaatatttcatttgagtggttaaagagtcatggc 338  Q
    |||||||||||||||| |||       ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  15216485 acaccgttaatttaaccccatttttttcaagtttaatcaattttaacgtgaaagcttggaagtttttaatatttaatttgagtggttaaatagtcatggc 15216386  T
Q  339 cattcgttggtcccacgtatcctttgtgatcgcagtctgcagcttgcattattgttcatct 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15216385 cattcgttggtcccacgtatcctttgtgatcgcagtctgcagcttgcattattgttcatct 15216325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 15216704 - 15216553
Alignment:
Q  20 gtcctttctatgagtactaggttggtgacctaagtttaattactgtttctcttatgttgtggttttgttgggttgctaacataaaaccgcaaaccgaacc 119  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| | ||||||| || |||||||||||||||||||||||||||    
T  15216704 gtcctttctatgaatactaggttggtgacctaagtttaattagtgtttctcttatgttgcgattttgtttggctgctaacataaaaccgcaaaccgaacc 15216605  T
Q  120 gaaccacatggttgagtnnnnnnntgatccgaatacatccgaaccaaatgca 171  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||    
T  15216604 gaaccacatggttgagtaaaaaaatgatccgaatacatccgaaccaaatgca 15216553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 8151133 - 8151215
Alignment:
Q  24 tttctatgagtactaggttgg-tgacctaagtttaattactgtttctcttatgttgtggttttgttgggttgctaacataaaa 105  Q
    ||||||||||||||||||||| ||||  ||||||||||| | |||||||||||||| | ||| ||| | ||||||| ||||||    
T  8151133 tttctatgagtactaggttgggtgacacaagtttaattagtatttctcttatgttgcgatttggttcgattgctaaaataaaa 8151215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 168
Target Start/End: Original strand, 23418414 - 23418528
Alignment:
Q  55 ttaattactgtttctcttatgttgtggttttgttgggttgctaacataaaa-ccgcaaaccgaaccgaaccacatggttgagtnnnnnnntgatccgaat 153  Q
    ||||||| ||||| |||||||||| ||||| ||| ||| | ||| |||||| || ||||||||||| ||||||  ||||||||       ||||||||||    
T  23418414 ttaattaatgtttttcttatgttgcggtttggttcggtcggtaaaataaaaacctcaaaccgaaccaaaccacgcggttgagtaataaaatgatccgaat 23418513  T
Q  154 acatccgaaccaaat 168  Q
    | |||||||||||||    
T  23418514 atatccgaaccaaat 23418528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 170
Target Start/End: Original strand, 33793081 - 33793198
Alignment:
Q  54 tttaattactgtttctcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaaccgaaccgaaccacatggttgagtnnnnnnntgatccgaa 152  Q
    |||||||| ||||| |||||| |||  |||| ||| ||||| ||| || ||||||||||||| || | ||||||| ||||||||       ||||| |||    
T  33793081 tttaattagtgtttttcttatattgcagtttggtttggttgataaaatcaaaaccgcaaaccaaatcaaaccacacggttgagtaaaaaaatgatctgaa 33793180  T
Q  153 tacatccgaaccaaatgc 170  Q
    ||||||||||||||||||    
T  33793181 tacatccgaaccaaatgc 33793198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 24 - 170
Target Start/End: Complemental strand, 54273592 - 54273444
Alignment:
Q  24 tttctatgagtactaggttggtgacctaagtttaattactgtttctcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaaccgaaccgaa 122  Q
    ||||| ||||||||||| |||||| ||||||||| ||| |||||||||||||||| ||||| ||| ||||||||| || ||||||||||||| |||||||    
T  54273592 tttctctgagtactaggctggtgaactaagtttagttagtgtttctcttatgttgcggtttggttcggttgctaaaataaaaaccgcaaaccaaaccgaa 54273493  T
Q  123 ccacatggttgagt-nnnnnnntgatccgaatacatccgaaccaaatgc 170  Q
     ||   ||||||||        |||||||||||||||||||||||||||    
T  54273492 tcatgcggttgagtaaaaaaaatgatccgaatacatccgaaccaaatgc 54273444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 10778027 - 10777940
Alignment:
Q  31 gagtactaggttggtgacctaagtttaattactgtttctcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaaccgaa 117  Q
    |||||||||||| |||| ||||||||||||| ||||| |||||||||||||||| ||| ||||||||| || |||||||||| |||||    
T  10778027 gagtactaggtttgtgatctaagtttaattagtgtttatcttatgttgtggtttggttcggttgctaaaataaaaaccgcaagccgaa 10777940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 35232945 - 35232874
Alignment:
Q  43 ggtgacctaagtttaattactgtttctcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaac 113  Q
    |||||| |||||||||||| ||||| |||||||||| ||||| ||| ||||| ||| || ||||||||||||    
T  35232945 ggtgacataagtttaattagtgtttttcttatgttgcggtttagttcggttgataaaataaaaaccgcaaac 35232874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 32073081 - 32072982
Alignment:
Q  24 tttctatgagtactaggttggtgacctaagtttaattactgtttctcttatgttgtggttttgttgggttgctaacataaaaccgcaaaccgaaccgaac 123  Q
    ||||||||||||||||||| ||| ||||| |||||||| ||||| |||| ||||| | ||| |||  |||||||| ||||||||||||||||||||||||    
T  32073081 tttctatgagtactaggtttgtgtcctaaatttaattagtgtttttcttgtgttgcgatttggttcagttgctaaaataaaaccgcaaaccgaaccgaac 32072982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 6267418 - 6267520
Alignment:
Q  24 tttctatgagtactaggttggtgacctaagtttaattactgtttctcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaaccgaaccgaa 122  Q
    ||||||||||||||||||| |||||||||||||| ||| |||||||||||||||| ||||| ||| ||||  ||| || ||||||||||||| |||| ||    
T  6267418 tttctatgagtactaggtttgtgacctaagtttagttaatgtttctcttatgttgcggtttggtttggtttttaaaataaaaaccgcaaaccaaaccaaa 6267517  T
Q  123 cca 125  Q
    |||    
T  6267518 cca 6267520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 24 - 171
Target Start/End: Complemental strand, 15837356 - 15837209
Alignment:
Q  24 tttctatgagtactaggttggtgacctaagtttaattactgtttctcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaaccgaaccgaa 122  Q
    ||||||||| |||||||||| |  |||||||||||||| ||||| |||||||||| ||||| ||| ||||||||| || |||||| |||||| |||||||    
T  15837356 tttctatgaatactaggttg-tatcctaagtttaattaatgtttttcttatgttgcggtttggttcggttgctaaaataaaaaccacaaaccaaaccgaa 15837258  T
Q  123 ccacatggttgagtnnnnnnntgatccgaatacatccgaaccaaatgca 171  Q
    |||  ||||| ||        |||||| ||| |||||||||||||||||    
T  15837257 ccatgtggttaaggaaaaatatgatccaaattcatccgaaccaaatgca 15837209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 16638427 - 16638496
Alignment:
Q  24 tttctatgagtactaggttggtgacctaagtttaattactgtttctcttatgttgtggttttgttgggtt 93  Q
    |||||| |||||||||||  ||||||||| |||||||| |||||||||||||||| ||||||||| ||||    
T  16638427 tttctaggagtactaggtctgtgacctaaatttaattagtgtttctcttatgttgcggttttgtttggtt 16638496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 170
Target Start/End: Original strand, 45366779 - 45366922
Alignment:
Q  29 atgagtactaggttggtgacctaag-tttaattactgtttctcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaaccgaaccgaaccac 126  Q
    ||||||| |||| |||||||||||| |||||||| |||||||||||||  | ||||| ||| ||||| ||| || |||| | ||||||||||| ||| |     
T  45366779 atgagtattaggatggtgacctaagttttaattagtgtttctcttatgccgcggtttagtttggttgttaaaataaaaatcacaaaccgaaccaaactat 45366878  T
Q  127 atggttgagtnnnnnnntgatccgaatacatccgaaccaaatgc 170  Q
     | |||||||       ||| |||||||||||||||||||||||    
T  45366879 gttgttgagtaaaaaaatgacccgaatacatccgaaccaaatgc 45366922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 11219469 - 11219537
Alignment:
Q  102 aaaaccgcaaaccgaaccgaaccacatggttgagtnnnnnnntgatccgaatacatccgaaccaaatgc 170  Q
    |||||||||||||||||| |||||  || ||||||       |||||||||||||||||||||||||||    
T  11219469 aaaaccgcaaaccgaaccaaaccatgtgattgagtaaaaaaatgatccgaatacatccgaaccaaatgc 11219537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 35687998 - 35687916
Alignment:
Q  24 tttctatgagtactaggttggtgacctaagtttaattactgtttctc-ttatgttgtggttttgttgggttgctaacataaaa 105  Q
    |||||||||||||| |||| ||  |||||||||||||| ||||| || |||||||| ||||| ||| |||| |||| ||||||    
T  35687998 tttctatgagtacttggtttgtatcctaagtttaattagtgtttttctttatgttgcggtttggttcggttactaaaataaaa 35687916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 13325747 - 13325819
Alignment:
Q  54 tttaattactgtttctcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaaccgaaccgaacca 125  Q
    |||||||| ||||| |||||| ||| ||||| ||| ||||| ||| || |||||||||||||||||| |||||    
T  13325747 tttaattattgtttttcttatattgcggtttggtttggttgataaaatcaaaaccgcaaaccgaaccaaacca 13325819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 20482945 - 20482887
Alignment:
Q  27 ctatgagtactaggttg-gtgacctaagtttaattactgtttctcttatgttgtggttt 84  Q
    ||||||||||||||||| ||||  |||||||||||| |||||||||||| ||| |||||    
T  20482945 ctatgagtactaggttgagtgatataagtttaattagtgtttctcttatattgcggttt 20482887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 170
Target Start/End: Complemental strand, 26344671 - 26344569
Alignment:
Q  69 tcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaaccgaaccgaaccacatggttgagtnnnnnnntgatccgaatacatccgaaccaaa 167  Q
    |||||| ||| ||||| ||| ||||| ||| || ||||| |||||||||||| |||||   ||||||||       ||||||||||||||||||||||||    
T  26344671 tcttatattgcggtttggttcggttggtaaaatcaaaactgcaaaccgaaccaaaccatgcggttgagtaaaaaattgatccgaatacatccgaaccaaa 26344572  T
Q  168 tgc 170  Q
    |||    
T  26344571 tgc 26344569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 33770146 - 33770183
Alignment:
Q  24 tttctatgagtactaggttggtgacctaagtttaatta 61  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  33770146 tttctatgagtactaggtttgtgacctacgtttaatta 33770183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 50311133 - 50311198
Alignment:
Q  50 taagtttaattactgtttctcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaacc 114  Q
    |||||||||||| ||||||| ||||||||  |||| ||| ||||||||| || |||||||||||||    
T  50311133 taagtttaattagtgtttcttttatgttgcagtttggttcggttgctaaaataaaaaccgcaaacc 50311198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 25559601 - 25559532
Alignment:
Q  102 aaaaccgcaaaccgaaccgaaccacatggttgagtnnnnnnntgatccgaatacatccgaaccaaatgca 171  Q
    |||||| ||||||||||| ||||| | ||||||||       ||||||||||| ||||||||||||||||    
T  25559601 aaaaccacaaaccgaaccaaaccatacggttgagtaaaaaaatgatccgaatatatccgaaccaaatgca 25559532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University