View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20477_high_25 (Length: 279)
Name: NF20477_high_25
Description: NF20477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20477_high_25 |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 21 - 279
Target Start/End: Complemental strand, 44871860 - 44871602
Alignment:
| Q |
21 |
cagagaatctgaggaggaagcagaagcaatagcaattcctttggaatttgatgaatcaacttctgatgaggactctgaagcctctagtacaagttctgaa |
120 |
Q |
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| T |
44871860 |
cagagaatctgaggaggaagcagaagcaatagcaattccttcggaatttgatgaatcaacttctgatgaggactctgaagcctctagtacaagttctgaa |
44871761 |
T |
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| Q |
121 |
tcaacttctgatgaggattctgaaacctcttgttccagttctgttaaaaaagctacggttactatggtatcaacaacaatggaaaatgagaatcatgcga |
220 |
Q |
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| T |
44871760 |
tcaacttctgatgaggattctgaaacctcttgttccagttctgttaaaaaagctacggttactatggtatcaacaacaatggaaaatgagaatcatgtga |
44871661 |
T |
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| Q |
221 |
gtcaatctgaaccagaagttacaaattcggtgggtagtggtaaaaaactaaaggtttta |
279 |
Q |
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| T |
44871660 |
gtcaatctgaaccagaagttacaaattcggtgggtagtggtaaaaaactaaaggtttta |
44871602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 34 - 279
Target Start/End: Original strand, 47522432 - 47522677
Alignment:
| Q |
34 |
gaggaagcagaagcaatagcaattcctttggaatttgatgaatcaacttctgatgaggactctgaagcctctagtacaagttctgaatcaacttctgatg |
133 |
Q |
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| T |
47522432 |
gaggaagcagcagcaatatcaatttcttctgaatcagatgaatcaacttctgatgacgattctgaagcctctagtgccagttctgaatcaacttctgatg |
47522531 |
T |
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| Q |
134 |
aggattctgaaacctcttgttccagttctgttaaaaaagctacggttactatggtatcaacaacaatggaaaatgagaatcatgcgagtcaatctgaacc |
233 |
Q |
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| T |
47522532 |
aggattctgaaacctctagttccggggatgttaataaggctatagtaggtacggtaccaacatcaatggaaaatgagaagcatgtgagtaaatttgaatc |
47522631 |
T |
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| Q |
234 |
agaagttacaaattcggtgggtagtggtaaaaaactaaaggtttta |
279 |
Q |
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| T |
47522632 |
agaacttaatgattcggtaggtagtgataaaagaggaaaggtttta |
47522677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 124 - 265
Target Start/End: Original strand, 47528146 - 47528287
Alignment:
| Q |
124 |
acttctgatgaggattctgaaacctcttgttccagttctgttaaaaaagctacggttactatggtatcaacaacaatggaaaatgagaatcatgcgagtc |
223 |
Q |
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| T |
47528146 |
acttctaatgaggattctgaagcctctagtttcatttctgttaaaaaagccacggttactacattatcaacatcaacggaaaatgagaagcatgtgattc |
47528245 |
T |
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| Q |
224 |
aatctgaaccagaagttacaaattcggtgggtagtggtaaaa |
265 |
Q |
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| T |
47528246 |
aatctaaaccagaagttactaattcggtgggtagtggtaaaa |
47528287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 265
Target Start/End: Original strand, 47549819 - 47549971
Alignment:
| Q |
119 |
aatcaacttctgatgaggattctgaaacctcttgttccagttctgttaaaaaagctacggttactatggtatcaa---caac---aatggaaaatgagaa |
212 |
Q |
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| T |
47549819 |
aatcaacttctagtaaggtttctaaagcctctagttccggctctgttaaaaaagctacactaactacggtatcaagatcaacttcaaaggaaaatgagaa |
47549918 |
T |
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| Q |
213 |
tcatgcgagtcaatctgaaccagaagttacaaattcggtgggtagtggtaaaa |
265 |
Q |
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| T |
47549919 |
acatgtgagtcaatctgaatcagaagtttctaattcagtggatagtggtaaaa |
47549971 |
T |
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