View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20477_high_29 (Length: 267)
Name: NF20477_high_29
Description: NF20477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20477_high_29 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 25 - 267
Target Start/End: Complemental strand, 44731784 - 44731542
Alignment:
| Q |
25 |
gtttgtaatttgacctttcctcacattgattccagcatttatctcaccctgtgcatgacgattcctcagctcagtaacaatcgcaatcggattcaaacca |
124 |
Q |
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| T |
44731784 |
gtttgtaaattgacctttcctcacatcgattccagcatttatctcaccttgtgcatgacgattcctcagctcagtaacaatcgcaatcggattcaaacca |
44731685 |
T |
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| Q |
125 |
gcattctcggccaaagtatacggaatgacttcaagtgcctcagcaaatgcttgaatgcaggaactttccatcccatgcagcacctttgcccaaacaccca |
224 |
Q |
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| T |
44731684 |
gcattctcggccaaagtatacggaatgacttcgagtgcctcagcaaatgcttgaatgcaggaaccttccatcccatgcagcacctttgcccaagcaccca |
44731585 |
T |
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| Q |
225 |
actgcctcgacaactcaatctggggcgctccaccaccagcaat |
267 |
Q |
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| T |
44731584 |
actgcctcgacaactcaatctcgggcgctccaccaccagcaat |
44731542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 22 - 267
Target Start/End: Complemental strand, 50702326 - 50702081
Alignment:
| Q |
22 |
gatgtttgtaatttgacctttcctcacattgattccagcatttatctcaccctgtgcatgacgattcctcagctcagtaacaatcgcaatcggattcaaa |
121 |
Q |
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| T |
50702326 |
gatgtttgtaatttgacctttcctgacattgattccagtattgatctcacctttagcatgacgattccttagctcagtaacaattgcaatcgggttcaaa |
50702227 |
T |
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| Q |
122 |
ccagcattctcggccaaagtatacggaatgacttcaagtgcctcagcaaatgcttgaatgcaggaactttccatcccatgcagcacctttgcccaaacac |
221 |
Q |
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| T |
50702226 |
cccgcattctcagcaagtgtatatggaacaacttcaagtgcctcagcaaatgcacgaatacagtaaccctccatgccatgcaaaaccttagcccaagcac |
50702127 |
T |
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| Q |
222 |
ccaactgcctcgacaactcaatctggggcgctccaccaccagcaat |
267 |
Q |
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| T |
50702126 |
ccaattgcctcgacagctctatctccggagcaccaccacctgcaat |
50702081 |
T |
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