View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20477_high_5 (Length: 519)
Name: NF20477_high_5
Description: NF20477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20477_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 16 - 406
Target Start/End: Original strand, 11558902 - 11559292
Alignment:
| Q |
16 |
caaatggtgattctacaagaaagtttcacatcatctgtggggtcatatgtgatatatgctccaattgacagaaaaactatggatgtagctttaagaggtg |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11558902 |
caaatggtgattctacaagaaagtttcacatcatccgtggggtcatatgttatatatgctccaattgacagaaaaactatggatgtggctttaagaggtg |
11559001 |
T |
|
| Q |
116 |
aagactccaaagagttaccaatccttccatatggtcttgttgtctgttcaaagaaccaagcaaatcttaatgccccatttggagcatctaacagcattga |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
11559002 |
aagactccaaagagttaccaatccttccatatggtcttattgtctgttcaaagaaccaagcaaatcttaatgcaccatttggagcatctaagagcattga |
11559101 |
T |
|
| Q |
216 |
agatggctcattgattactttggcagcccaaacatatgcaattggccaagtgcttaatgtggattctcttaatgatatcaacactcaattggcatctact |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11559102 |
agatggctcattgattactttggcagcccaaacatatgcaattggccaagtgcttaatgtggattctcttaatgatatcaacagtcaattggcatctact |
11559201 |
T |
|
| Q |
316 |
attctaaatgtgaaggatgctcttatgagttctatttaacaatttggacgtagttgttcattttgttgcttaagcaaacaaaataaatcaa |
406 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11559202 |
attctaaatgtgaaggatgctcttatgagttctatttaacaatttggacgtagttgttcattttgttgcttaagcaaacaaaataaatcaa |
11559292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 518
Target Start/End: Original strand, 11545457 - 11545972
Alignment:
| Q |
16 |
caaatggtgattctacaagaaagtttcacatcatctgtggggtcatatgtgatatatgctccaattgacagaaaaactatggatgtagctttaagaggtg |
115 |
Q |
| |
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|||||| ||||||||||||||||||||||||| ||| || ||||| | |||||||||||| ||||||| ||||||||||||| ||||||||||||| |
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| T |
11545457 |
caaatgatgattctacaagaaagtttcacatctcgtgtaggatcatacattatatatgctccatctgacagacaaactatggatgtggctttaagaggtg |
11545556 |
T |
|
| Q |
116 |
aagactccaaagagttaccaatccttccatatggtcttgttgtctgttcaaagaaccaagcaaatcttaatgccccatttggagcatctaacagcattga |
215 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||| |||||||||||||||||| |||| |||||||||| || ||||||||||| ||||||| ||||| |
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| T |
11545557 |
aagactctaaagagctaccaatccttccatatggttttgttgtctgttcaaagagccaaccaaatcttaacgcaccatttggagcgtctaacaatattga |
11545656 |
T |
|
| Q |
216 |
agatggctcattgattactttggcagcccaaa---------------catatgcaattggccaagtgcttaatgtggattctcttaatgatatcaacact |
300 |
Q |
| |
|
||||||||| ||| | || ||||||||||||| || ||| ||||| |||||||||||||||||| | ||| |||||||||||| |
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| T |
11545657 |
agatggctcgttgttaaccttggcagcccaaattctgagcactagtccacatgaaattgaccaagtgcttaatgtggaagatattactgatatcaacaca |
11545756 |
T |
|
| Q |
301 |
caattggcatctactattctaaatgtgaaggatgctcttatgagttctatttaacaatttggacgt--agttgttcattttgttgcttaagcaaacaaaa |
398 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
11545757 |
catttggcaactactattctaaatgtgaaggatgctcttatgagctctatttaacaatttggacgtgtagttgttcattttgttgcttaagcaaacaaaa |
11545856 |
T |
|
| Q |
399 |
taaatcaacgcttttctttgtattatgttataattaagtttgcttgacattttaaatcgtataataatacatgactttggtcttttttctatgaatgatg |
498 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11545857 |
taaatcaatgcttttctttgtattatgttataa----gtttgcttgacattttaaatcgtataataatacatgactttggtcttttttctatgaatgatg |
11545952 |
T |
|
| Q |
499 |
aatttatctatcctatgtta |
518 |
Q |
| |
|
||||||||||| |||||||| |
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|
| T |
11545953 |
aatttatctattctatgtta |
11545972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 433 - 509
Target Start/End: Original strand, 11559350 - 11559426
Alignment:
| Q |
433 |
taagtttgcttgacattttaaatcgtataataatacatgactttggtcttttttctatgaatgatgaatttatctat |
509 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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|
| T |
11559350 |
taagtttgcttgacattttaaatcttataataatacatgactttggtcttttctctatgaatgatgaattgatctat |
11559426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 16 - 406
Target Start/End: Complemental strand, 20915873 - 20915470
Alignment:
| Q |
16 |
caaatggtgattctacaagaaagtttcacatcatctgtggggtcatatgtgatatatgctccaattgacagaaaaactatggatgtagctttaagaggtg |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||||| | ||| |||||||| |||||||||||||||||||||||||||||| |||| ||||||| ||||| |
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| T |
20915873 |
caaatggtgattctacaggaaagtttcacatctcatatggaatcatatgttatatatgctccaattgacagaaaaactatgaatgtggctttaataggtg |
20915774 |
T |
|
| Q |
116 |
aagactccaaagagttaccaatccttccatatggtcttgttgtctgttcaaagaaccaagcaaatcttaatgccccatttggagcatctaacagcattga |
215 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||| ||||||| |||||||||| |||| ||||| ||||||| ||||| ||||||||||| | | |
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|
| T |
20915773 |
aagactctaaagatttaccaatccttccatatggttttgttgtgtgttcaaagagccaaccaaatattaatgcagtatttgaagcatctaacaataattg |
20915674 |
T |
|
| Q |
216 |
agatggctcattgattactttggcagcccaaa---------------catatgcaattggccaagtgcttaatgtggattctcttaatgatatcaacact |
300 |
Q |
| |
|
||||||||||||| | ||||||||| |||||| |||||||||||| ||||||| ||||| |||||| | ||| |||||||||||| |
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|
| T |
20915673 |
agatggctcattgttaactttggcatcccaaattatgagtactaatccatatgcaattgaccaagtggttaatttggattatgttactgatatcaacacc |
20915574 |
T |
|
| Q |
301 |
caattggcatctactattctaaatgtgaaggatgctcttatgagttctatttaacaatttggacgtagttgttcattttgttgcttaagcaaacaaaata |
400 |
Q |
| |
|
||||||||| |||||||||| | ||| |||||||| || |||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
20915573 |
caattggcaactactattctgcaagtg-aggatgcttttttgagctatatttaacaatttgga-atagttgttcattttgttgcttaagcaaacaaaata |
20915476 |
T |
|
| Q |
401 |
aatcaa |
406 |
Q |
| |
|
|||||| |
|
|
| T |
20915475 |
aatcaa |
20915470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 16 - 363
Target Start/End: Original strand, 20916227 - 20916589
Alignment:
| Q |
16 |
caaatggtgattctacaagaaagtttcacatcatctgtggggtcatatgtgatatatgctccaattgacagaaaaactatggatgtagctttaagaggtg |
115 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||| |||||||| ||||||||| ||||||| |||||||||||| |||| |||||||| |||| |
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|
| T |
20916227 |
caaatgatgattctacaagaaagtttcacatctcatgtgggatcatatgttatatatgcttcaattgatagaaaaactatgaatgtggctttaaggggtg |
20916326 |
T |
|
| Q |
116 |
aagactccaaagagttaccaatccttccatatggtcttgttgtctgttcaaagaaccaagcaaatcttaatgccccatttggagcatctaacagcattga |
215 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||| |||||||||||||||||| |||| |||| | ||||| |||||| |||||||||||| |||| |
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|
| T |
20916327 |
aagactctaaagatttaccaatccttccatatggttttgttgtctgttcaaagagccaactaaatatgaatgcaacatttgaagcatctaacagtattgg |
20916426 |
T |
|
| Q |
216 |
agatggctcattgattactttggcagcccaaa---------------catatgcaattggccaagtgcttaatgtggattctcttaatgatatcaacact |
300 |
Q |
| |
|
||||||||||||| | ||||||||| |||||| |||||||||||| | ||||||||||| | |||| | ||| |||||| ||||| |
|
|
| T |
20916427 |
agatggctcattgttaactttggcatcccaaatttcgagtactagtccatatgcaattgactaagtgcttaattttgattatgttactgatatgaacacc |
20916526 |
T |
|
| Q |
301 |
caattggcatctactattctaaatgtgaaggatgctcttatgagttctatttaacaatttgga |
363 |
Q |
| |
|
||||||||| |||||||||| | |||||||||||||| ||||| | ||||||||| |||||| |
|
|
| T |
20916527 |
caattggcaactactattctgcaagtgaaggatgctctcatgagctatatttaacagtttgga |
20916589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 12064081 - 12063987
Alignment:
| Q |
16 |
caaatggtgattctacaagaaagtttcacatcatctgtggggtcatatgtgatatatgctccaattgacagaaaaactatggatgtagctttaag |
110 |
Q |
| |
|
|||||||| ||||| || |||||||||||||| | |||||||||||| | ||||||||||||||||||||||||||| ||||||| |||||||| |
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|
| T |
12064081 |
caaatggttattctgcaggaaagtttcacatctccggtggggtcatatattatatatgctccaattgacagaaaaactgtggatgtggctttaag |
12063987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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