View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20477_low_1 (Length: 743)
Name: NF20477_low_1
Description: NF20477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20477_low_1 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 630; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 1 - 743
Target Start/End: Complemental strand, 13657341 - 13656597
Alignment:
| Q |
1 |
ttagaagaaagaagacatctaaaaatacaattttaagtttggctcgtccgtctttttattttgaagtcataaatatcatctgagtatggggcagagccaa |
100 |
Q |
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||||||||||||||| || | | ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
13657341 |
ttagaagaaagaagatgtccagatatacaattttatgtttggctcgtccgtctttttattttaaagtcataaatatcatctgtgtatggggcagagccaa |
13657242 |
T |
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| Q |
101 |
cccaaattttattaaaagtaagtgatgcctaaagtaagattcaatacattagccnnnnnnnn--gttagaattattgtttgtaaaatttaatgaaaaata |
198 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||||| || |||| ||||||||||||||||||||||| |||||||||||| |
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| T |
13657241 |
cccaaattttattaaaagtaagtgatgcttaaagtaaaattcaatatatgagccttttttttttgttagaattattgtttgtaaaatctaatgaaaaata |
13657142 |
T |
|
| Q |
199 |
atttttgttggtagatctaaatcagaggctttggtaaccttactcttaggccgaccctcgtgtgggggcacaacttaaattttgtgtattgatacacaaa |
298 |
Q |
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|||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13657141 |
atttctgttggtagatctaaatcagagactttggtgaccttactcttaggccgaccctcgtgtgggggcacaacttaaattttgtgtattgatacacaaa |
13657042 |
T |
|
| Q |
299 |
tgactgattactactgccatggtcaacatgtccaccactttgtgtcgtgtaccattgctgcaaaaccatgcatgcttgaacactatcatcttattttgga |
398 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13657041 |
tgagtgattactactgccatggtcaacatgtccaccactttgtgtcgtgtaccattgctgcaataccatgcatgcttgaacactatcatcttattttgga |
13656942 |
T |
|
| Q |
399 |
tgaccaatctcatgcattgtaaaattcattcaaaccatcatgaataggaaaactaaaataacgaaaaacactatttttctcctatatcaacacattggtt |
498 |
Q |
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| T |
13656941 |
ttaccaatctcatgcattgtaaaattcattcaaaccatcatgaataggaaaactaaaataacgaaaaacactatttttctcctatatcaacacattggtt |
13656842 |
T |
|
| Q |
499 |
tccactttcaatgtcaccaccaccaccctaaaaagtcacataacattacatagttacccctatttatgattcaccttttattatagtttatgtttgttgg |
598 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13656841 |
tccactttcaatgtcaccaccaccaccctaaaaagtcacataacattacatagttacccctatttatgattcaccttttattatagtttatgtttgttgg |
13656742 |
T |
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| Q |
599 |
tggacctaattcctgtttgcagattttaggtctacaatcggtattgtagttgaatataaagcctttgaaagctgaaacatacagctgtacggtaccatat |
698 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13656741 |
tggacataattcctgtttgcagattttaggtctacaatcggtattgtagttgaatataaagcctttgaaagctgaaacatacagctgtacggtaccatat |
13656642 |
T |
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| Q |
699 |
tattgtagtggtgtcacatgcagcagagattgatttccctctcat |
743 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13656641 |
tattgtagtggtgtcacatgcagcagagattgatttccctctcat |
13656597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 1 - 743
Target Start/End: Complemental strand, 13715983 - 13715239
Alignment:
| Q |
1 |
ttagaagaaagaagacatctaaaaatacaattttaagtttggctcgtccgtctttttattttgaagtcataaatatcatctgagtatggggcagagccaa |
100 |
Q |
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||||||||||||||| || | | ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
13715983 |
ttagaagaaagaagatgtccagatatacaattttatgtttggctcgtccgtctttttattttaaagtcataaatatcatctgtgtatggggcagagccaa |
13715884 |
T |
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| Q |
101 |
cccaaattttattaaaagtaagtgatgcctaaagtaagattcaatacattagccnnnnnnnn--gttagaattattgtttgtaaaatttaatgaaaaata |
198 |
Q |
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| T |
13715883 |
cccaaattttattaaaagtaagtgatgcttaaagtaaaattcaatatatgagccttttttttttgttagaattattgtttgtaaaatctaatgaaaaata |
13715784 |
T |
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| Q |
199 |
atttttgttggtagatctaaatcagaggctttggtaaccttactcttaggccgaccctcgtgtgggggcacaacttaaattttgtgtattgatacacaaa |
298 |
Q |
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|||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13715783 |
atttctgttggtagatctaaatcagagactttggtgaccttactcttaggccgaccctcgtgtgggggcacaacttaaattttgtgtattgatacacaaa |
13715684 |
T |
|
| Q |
299 |
tgactgattactactgccatggtcaacatgtccaccactttgtgtcgtgtaccattgctgcaaaaccatgcatgcttgaacactatcatcttattttgga |
398 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13715683 |
tgagtgattactactgccatggtcaacatgtccaccactttgtgtcgtgtaccattgctgcaataccatgcatgcttgaacactatcatcttattttgga |
13715584 |
T |
|
| Q |
399 |
tgaccaatctcatgcattgtaaaattcattcaaaccatcatgaataggaaaactaaaataacgaaaaacactatttttctcctatatcaacacattggtt |
498 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13715583 |
ttaccaatctcatgcattgtaaaattcattcaaaccatcatgaataggaaaactaaaataacgaaaaacactatttttctcctatatcaacacattggtt |
13715484 |
T |
|
| Q |
499 |
tccactttcaatgtcaccaccaccaccctaaaaagtcacataacattacatagttacccctatttatgattcaccttttattatagtttatgtttgttgg |
598 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13715483 |
tccactttcaatgtcaccaccaccaccctaaaaagtcacataacattacatagttacccctatttatgattcaccttttattatagtttatgtttgttgg |
13715384 |
T |
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| Q |
599 |
tggacctaattcctgtttgcagattttaggtctacaatcggtattgtagttgaatataaagcctttgaaagctgaaacatacagctgtacggtaccatat |
698 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13715383 |
tggacataattcctgtttgcagattttaggtctacaatcggtattgtagttgaatataaagcctttgaaagctgaaacatacagctgtacggtaccatat |
13715284 |
T |
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| Q |
699 |
tattgtagtggtgtcacatgcagcagagattgatttccctctcat |
743 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13715283 |
tattgtagtggtgtcacatgcagcagagattgatttccctctcat |
13715239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 26765152 - 26765191
Alignment:
| Q |
180 |
taaaatttaatgaaaaataatttttgttggtagatctaaa |
219 |
Q |
| |
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||||||||||||||||||||||||||||||| | |||||| |
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| T |
26765152 |
taaaatttaatgaaaaataatttttgttggtgggtctaaa |
26765191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 18732352 - 18732314
Alignment:
| Q |
173 |
ttgtttgtaaaatttaatgaaaaataat-ttttgttggt |
210 |
Q |
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| T |
18732352 |
ttgtttgtaaaatttaatgaaaaataatgttttgttggt |
18732314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 41872428 - 41872461
Alignment:
| Q |
173 |
ttgtttgtaaaatttaatgaaaaataatttttgt |
206 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
41872428 |
ttgtttataaaatttaatgaaaaataatttttgt |
41872461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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