View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20477_low_11 (Length: 414)
Name: NF20477_low_11
Description: NF20477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20477_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 43 - 213
Target Start/End: Complemental strand, 5901726 - 5901552
Alignment:
| Q |
43 |
gacataatgaacgattatatataatatgatgaaattaatattgaagtaa----tgtacataaaaatgtactaattaagggtgatctataagagaaatgaa |
138 |
Q |
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| T |
5901726 |
gacataatggacgatgatatataatatgatgaaattaatattgaagtaaactatgtacataaaaatgtactaattaagggtgatctataagagaaatgaa |
5901627 |
T |
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| Q |
139 |
ctaaccattaggatctgcaaatccacaaaatatgcatccacatagccatttgatcagcataacatgtcaaatgac |
213 |
Q |
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| T |
5901626 |
ctaaccattaggatctgcaaatccacaaaatatgcatccacatagccatttgatcagcataacatgtcaaatgac |
5901552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 281 - 395
Target Start/End: Complemental strand, 5901483 - 5901369
Alignment:
| Q |
281 |
agagagtataaaacattaattaagatcaagtaaattaccatttatccaattctttggaggttggaaatgataagcagttctgtaaggttgtttgaaggaa |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5901483 |
agagagtataaaacattaattaagatcaagtaaattaccatttatccaattctttggaggttggaaatgataagcagttctgtaaggttgtttgaaggaa |
5901384 |
T |
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| Q |
381 |
tcatcagaagataaa |
395 |
Q |
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| T |
5901383 |
tcatcagaagataaa |
5901369 |
T |
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