View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20477_low_12 (Length: 413)
Name: NF20477_low_12
Description: NF20477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20477_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 10671644 - 10671861
Alignment:
| Q |
5 |
aacctttcatggaaaaatttcttagtgataaatcatctaatttctaatcaaaaagatataaaagatgatcttcagcaatcaacaataaacgaacaacaac |
104 |
Q |
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| T |
10671644 |
aacctttcatggaaaaatttcttagtgataaatcatctaatttctaataaaaaagatataaaagatgatcttcagcaatcaacaataaacaaacaacaac |
10671743 |
T |
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| Q |
105 |
atatcactacattatgcaagtaataagtgatgagaccatttggttctattgtgaaaatgttagaaacaatgattttcacctcaccaaaacttgattttga |
204 |
Q |
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| T |
10671744 |
atatcactacattatgcaaataataagtgatgagaccatttggttctattgtgaaaatgttagaaacaatgattttcacctcaccaaaacttgattttga |
10671843 |
T |
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| Q |
205 |
aaaacctctagcattgta |
222 |
Q |
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|||| ||||||||||||| |
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| T |
10671844 |
aaaaactctagcattgta |
10671861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 325 - 409
Target Start/End: Original strand, 10671962 - 10672046
Alignment:
| Q |
325 |
acacaacaacaacaatctaattcatatgatcatcaataaatctaatttcatgagactaataaaataaaatagagaataatctacc |
409 |
Q |
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| T |
10671962 |
acacaataacaacaatctaattcatatgatcatcaataaatctaatttcatgagactaataaaataaaatagagaacaatctacc |
10672046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 377
Target Start/End: Complemental strand, 2776334 - 2776287
Alignment:
| Q |
330 |
acaacaacaatctaattcatatgatcatcaataaatctaatttcatga |
377 |
Q |
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| T |
2776334 |
acaacaacaatcttattcatatgatcatcaataaatttaatttcatga |
2776287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 409
Target Start/End: Complemental strand, 2776788 - 2776720
Alignment:
| Q |
341 |
ctaattcatatgatcatcaataaatctaatttcatgagactaataaaataaaatagagaataatctacc |
409 |
Q |
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|||||||||||||||||||||| |||||||||||| | || |||||| | | ||||||| |||||||| |
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| T |
2776788 |
ctaattcatatgatcatcaatatatctaatttcataaaacctataaaaaagattagagaacaatctacc |
2776720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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