View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20477_low_14 (Length: 401)
Name: NF20477_low_14
Description: NF20477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20477_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 33438229 - 33438608
Alignment:
| Q |
1 |
atgaaaagcaaaaattaaatgtacaacttgttttcgaaagcaaatgtaaaactcatcaatcaacattaaatgtgctattagcaacaaaaaa-taaacatt |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
33438229 |
atgaaaagcaaaaattaaatgtacaacttgttttcgaaagcaaatgtaaaactcatcaatcaacattaaatgtgctattattaacaaaaaaataaacatt |
33438328 |
T |
|
| Q |
100 |
aaatgggtaacctgtaaatgagttaattttacagcttaaatttcgttttcaaatctcccaatatattgttcaagttgttttgacttccaagcattgaatc |
199 |
Q |
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| T |
33438329 |
aaatgggtaacctgtaaatgagttaattttacagcttaaatttcgttttcaaatcccccaatatattgatcaagttgttttgacttccaagcattgaatc |
33438428 |
T |
|
| Q |
200 |
aaacacgagttggccatttagggcaaacgttaatttaatttgtgtggataccacatactactatatgaaagcaaccaaaccttctctagtcctaatgata |
299 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33438429 |
aaacacgagttggccatttagggcaaacgttaa-----tttgtgtggataccacatactactatatgaaagcaaccaaaccttctctagtcctaatgata |
33438523 |
T |
|
| Q |
300 |
tattggccaaacgtttgtgtggatactacataataatagtatgatatttgctgctacacaagatccagtttttaatagtatgatg |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33438524 |
tattggccaaacgtttgtgtggatactacataataatagtatgatatttgctgctacacaagatccagtttttaatagtatgatg |
33438608 |
T |
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