View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20477_low_15 (Length: 362)
Name: NF20477_low_15
Description: NF20477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20477_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 44731513 - 44731168
Alignment:
| Q |
1 |
acaacacacaaagcatcatgcaaactcctctacgcttcatcaagcacaagcaagttggatccacgaacaagcacagttttggtctt-acccatatcctta |
99 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
44731513 |
acaacacacaaagcatcatgcaaactcctctgcgcttcatcaagcacaagcaagttggatccacgaacaagcacagttgtggtctttacccatatcctta |
44731414 |
T |
|
| Q |
100 |
acacctgaaatctttacaatcttcccatcatccccaagagcaacctcctccacaagatcagcataacccaacatctctttacaaaaatgctcaatattag |
199 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44731413 |
acacctgaaatctt-acaatcttcccatcatccccaagagcaacctcctccacaagatcagcataacccaacttctctttacaaaaatgctcaatattag |
44731315 |
T |
|
| Q |
200 |
ccaataggcaaacaattaagtgtcttggtaataatcttaatctcatcgcattcaacatccttaatcaccaaaatgttagttttagcaagataatgcaaag |
299 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44731314 |
ccaataggcaaacaattaagtgtcttggtaataatctcaatctcattgcattcaacatccttaatcaccaaaatgttagctttagcaagataatgcaaag |
44731215 |
T |
|
| Q |
300 |
acaaatcagtagcagcatcactcaaaatactctcctcctgagtcaac |
346 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44731214 |
acaaatcagtagcagcatcactcaaaatactctcctcctgagtcaac |
44731168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 50702052 - 50701725
Alignment:
| Q |
1 |
acaacacacaaagcatcatgcaaactcctctacgcttcatcaagcacaagcaagttggatccacgaacaagcacagttttggtcttacccatatccttaa |
100 |
Q |
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|||||||||||||||||||||| ||| | || |||||||| ||||||||||| || ||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
50702052 |
acaacacacaaagcatcatgcagacttcgctcagcttcatcgagcacaagcaaattagatccacgaacaagcacagttgtggtctttcccatatccttaa |
50701953 |
T |
|
| Q |
101 |
cacctgaaatctttacaatcttcccatcatccccaagagcaacctcctccacaagatcagcataacccaacatctctttacaaaaatgctcaatattagc |
200 |
Q |
| |
|
||| |||||||| |||||||||||||| |||||||| || ||| || ||||||||||||||||||||| |||| || |||||| ||||||||||| |
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|
| T |
50701952 |
taccagaaatcttcacaatcttcccatc---cccaagagaaagctcttctacaagatcagcataacccaacttctcagcacgaaaatgttcaatattagc |
50701856 |
T |
|
| Q |
201 |
caataggcaaacaattaagtgtcttggtaataatcttaatctcatcgcattcaacatccttaatcaccaaaatgttagttttagcaagataatgcaaaga |
300 |
Q |
| |
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|||||||||||||||||| ||||||||||| | || |||||| || | |||||||| |||||||| ||||| |||| ||||||||||||||||||||| |
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| T |
50701855 |
-aataggcaaacaattaagagtcttggtaatgaactcaatctcgtcacgctcaacatctttaatcactaaaatcttagctttagcaagataatgcaaaga |
50701757 |
T |
|
| Q |
301 |
caaatcagtagcagcatcactcaaaatactct |
332 |
Q |
| |
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|||||||||| ||||||| ||||||||||||| |
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|
| T |
50701756 |
caaatcagtaacagcatctctcaaaatactct |
50701725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 20827156 - 20827039
Alignment:
| Q |
2 |
caacacacaaagcatcatgcaaactcctctacgcttcatcaagcacaagcaagttggatccacgaacaagcacagttttggtcttacccatatccttaac |
101 |
Q |
| |
|
|||||||||||||||| |||| ||| | || ||||||| ||||||||||| || ||||||||||||||||||||| ||||||| ||||||||| ||| |
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|
| T |
20827156 |
caacacacaaagcatcgtgcagacttcgctcaccttcatcgagcacaagcaaattagatccacgaacaagcacagttgtggtctttcccatatccctaat |
20827057 |
T |
|
| Q |
102 |
acctgaaatctttacaat |
119 |
Q |
| |
|
||| |||||||| ||||| |
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|
| T |
20827056 |
accagaaatcttcacaat |
20827039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 332
Target Start/End: Complemental strand, 20826854 - 20826776
Alignment:
| Q |
254 |
acatccttaatcaccaaaatgttagttttagcaagataatgcaaagacaaatcagtagcagcatcactcaaaatactct |
332 |
Q |
| |
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||||| ||||||||||||| |||| |||| |||||||||||||||||||||||| | || |||| ||||||||||||| |
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| T |
20826854 |
acatctttaatcaccaaaaacttagctttaacaagataatgcaaagacaaatcagcaacaacatctctcaaaatactct |
20826776 |
T |
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