View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20477_low_16 (Length: 358)
Name: NF20477_low_16
Description: NF20477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20477_low_16 |
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| [»] scaffold0209 (2 HSPs) |
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Alignment Details
Target: scaffold0209 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 14 - 341
Target Start/End: Complemental strand, 10439 - 10112
Alignment:
| Q |
14 |
cataggtattttcattatttctggaatcgtttggacagcaaaaatgatttgatgaactacaaagaatttcttcaacaagaagatcagaatatacgccgat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10439 |
cataggtattttcattatttctggaatcgtttggacagcaaaaatgatttgatgaactacaaagaatttcttcaacaagaagatcagaatatacgccgat |
10340 |
T |
|
| Q |
114 |
gttaccaaaagaagttctatgatatcagcaatgaacaaatggttgatatgatactgttggattctgtcttcatcatggagttatttttaagagaaaacaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10339 |
gttaccaaaagaagttctatgatatcagcaatgaacaaatggttgatatgatactgttggattctgtcttcatcatggagttatttttaagagaaaacaa |
10240 |
T |
|
| Q |
214 |
aaaatgggaacacaaagatgattatattataactcaactttgtgtgagtagaagtattcaaagggatttgttgcttattgagaatcaacttccaatgtat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10239 |
aaaatgggaacacaaagatgattatattataactcaactttgtgtgagtagaagtattcaaagggatttgttgcttattgagaatcaacttccaatgtat |
10140 |
T |
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| Q |
314 |
gtcttggagaaactctatgacacagttg |
341 |
Q |
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||||||||||||||||||| |||||||| |
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| T |
10139 |
gtcttggagaaactctatggcacagttg |
10112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 14 - 341
Target Start/End: Complemental strand, 23893 - 23566
Alignment:
| Q |
14 |
cataggtattttcattatttctggaatcgtttggacagcaaaaatgatttgatgaactacaaagaatttcttcaacaagaagatcagaatatacgccgat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23893 |
cataggtattttcattatttctggaatcgtttggacagcaaaaatgatttgatgaactacaaagaatttcttcaacaagaagatcagaatatacgccgat |
23794 |
T |
|
| Q |
114 |
gttaccaaaagaagttctatgatatcagcaatgaacaaatggttgatatgatactgttggattctgtcttcatcatggagttatttttaagagaaaacaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23793 |
gttaccaaaagaagttctatgatatcagcaatgaacaaatggttgatatgatactgttggattctgtcttcatcatggagttatttttaagagaaaacaa |
23694 |
T |
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| Q |
214 |
aaaatgggaacacaaagatgattatattataactcaactttgtgtgagtagaagtattcaaagggatttgttgcttattgagaatcaacttccaatgtat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23693 |
aaaatgggaacacaaagatgattatattataactcaactttgtgtgagtagaagtattcaaagggatttgttgcttattgagaatcaacttccaatgtat |
23594 |
T |
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| Q |
314 |
gtcttggagaaactctatgacacagttg |
341 |
Q |
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||||||||||||||||||| |||||||| |
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| T |
23593 |
gtcttggagaaactctatggcacagttg |
23566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 14 - 337
Target Start/End: Complemental strand, 116047 - 115724
Alignment:
| Q |
14 |
cataggtattttcattatttctggaatcgtttggacagcaaaaatgatttgatgaactacaaagaatttcttcaacaagaagatcagaatatacgccgat |
113 |
Q |
| |
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||||| ||||| |||||||| |||||||| | |||| |||| |||||| ||||||||||||| || |||||||||||||| || || |||||||||| |
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| T |
116047 |
catagatatttccattatttttggaatcgcctagacaagaaaagtgatttcatgaactacaaagttttccttcaacaagaagagcaaaaaatacgccgat |
115948 |
T |
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| Q |
114 |
gttaccaaaagaagttctatgatatcagcaatgaacaaatggttgatatgatactgttggattctgtcttcatcatggagttatttttaagagaaaacaa |
213 |
Q |
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||||||||||||| ||| ||||||| || ||| ||| ||||||| |||||||| ||||||||||| |||||||||||||| ||| |||||||||| || |
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| T |
115947 |
gttaccaaaagaaattcacagatatcaacagtgagcaattggttgacatgatactattggattctgtgttcatcatggagttgtttctaagagaaaataa |
115848 |
T |
|
| Q |
214 |
aaaatgggaacacaaagatgattatattataactcaactttgtgtgagtagaagtattcaaagggatttgttgcttattgagaatcaacttccaatgtat |
313 |
Q |
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||||||||| ||||||||||||||||| ||||||||||||||||| |||| |||||| || |||||||||||||| |||||||||| |||||||| ||| |
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| T |
115847 |
aaaatgggagcacaaagatgattatataataactcaactttgtgtaagtaaaagtatccagcgggatttgttgcttcttgagaatcagcttccaatttat |
115748 |
T |
|
| Q |
314 |
gtcttggagaaactctatgacaca |
337 |
Q |
| |
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|| ||||| ||||| ||||||||| |
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| T |
115747 |
gtgttggaaaaactatatgacaca |
115724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 53 - 341
Target Start/End: Original strand, 177779 - 178067
Alignment:
| Q |
53 |
aaaaatgatttgatgaactacaaagaatttcttcaacaagaagatcagaatatacgccgatgttaccaaaagaagttctatgatatcagcaatgaacaaa |
152 |
Q |
| |
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||||||||||| || |||||||||| || || |||||||||| | ||||| |||| ||||||||||||||||| |||||||||| |||||||| |
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| T |
177779 |
aaaaatgatttaattaactacaaagctttcctagaacaagaagagaaaaatattcgccattgttaccaaaagaagtttcctgatatcagccatgaacaat |
177878 |
T |
|
| Q |
153 |
tggttgatatgatactgttggattctgtcttcatcatggagttatttttaagagaaaacaaaaaatgggaacacaaagatgattatattataactcaact |
252 |
Q |
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| ||||| |||||| |||||||| ||| |||||||||||| | |||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
177879 |
ttgttgacatgatattgttggatgttgtgttcatcatggagctgtttttaagagaagctaaaaaatgggaacacaaagatgattatatagtaactcaact |
177978 |
T |
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| Q |
253 |
ttgtgtgagtagaagtattcaaagggatttgttgcttattgagaatcaacttccaatgtatgtcttggagaaactctatgacacagttg |
341 |
Q |
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|||| | |||| || |||||| || ||||||||| |||||||||| ||||||| ||||| ||||| ||||| ||||||||||||| |
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| T |
177979 |
ttgtttaagtaaaaatattcagcatgacttgttgcttcttgagaatcagattccaatttatgtgttggaaaaactatatgacacagttg |
178067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 53 - 341
Target Start/End: Original strand, 606469 - 606757
Alignment:
| Q |
53 |
aaaaatgatttgatgaactacaaagaatttcttcaacaagaagatcagaatatacgccgatgttaccaaaagaagttctatgatatcagcaatgaacaaa |
152 |
Q |
| |
|
|||| |||||| |||||||||||| || ||| |||||||||| || ||||| |||| |||||||| || | || |||||| ||| | ||||| |
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| T |
606469 |
aaaagtgatttaatgaactacaaaactttccttgaacaagaagaacataatattcgccactgttaccagaaaatttttgttgatattagccagaaacaat |
606568 |
T |
|
| Q |
153 |
tggttgatatgatactgttggattctgtcttcatcatggagttatttttaagagaaaacaaaaaatgggaacacaaagatgattatattataactcaact |
252 |
Q |
| |
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| |||||||||||||| |||||| |||| |||||||||||||| ||| | ||||| || |||| ||||||||||||||||||||| || ||||||||| |
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| T |
606569 |
ttgttgatatgatactattggatgctgtgttcatcatggagttgtttcttagagagaaaaaaagatgggaacacaaagatgattacatagtaactcaaca |
606668 |
T |
|
| Q |
253 |
ttgtgtgagtagaagtattcaaagggatttgttgcttattgagaatcaacttccaatgtatgtcttggagaaactctatgacacagttg |
341 |
Q |
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|||||| || | |||||| ||| |||||||||||||| |||||||||| |||||||| ||||| || || ||| | |||||||| |||| |
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| T |
606669 |
ttgtgtaagcaaaagtatccaacgggatttgttgcttcttgagaatcagcttccaatctatgtgttagaaaaattatatgacacggttg |
606757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 87 - 238
Target Start/End: Complemental strand, 37438606 - 37438450
Alignment:
| Q |
87 |
aacaagaagatcagaatatacgccgatgttaccaaaagaagttctatgatatcagcaatgaacaa---atg-gttgatatgatactgttggattctgtct |
182 |
Q |
| |
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|||||||||| || |||||||||||||||||||||||||| |||| ||||||||||| ||||| ||| | ||||||||||||||||| ||| | |
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| T |
37438606 |
aacaagaagagcaaaatatacgccgatgttaccaaaagaaattctcaaatatcagcaataaacaatttatgtatatatatgatactgttggatgttgtgt |
37438507 |
T |
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| Q |
183 |
tcatcatggagtt-atttttaagagaaaacaaaaaatgggaacacaaagatgattat |
238 |
Q |
| |
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|||||||| ||| |||||||||||| || |||| |||||| |||||||||||| |
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|
| T |
37438506 |
tcatcatgatgttgttttttaagagaagctaataaataggaacaaaaagatgattat |
37438450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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