View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20477_low_17 (Length: 357)
Name: NF20477_low_17
Description: NF20477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20477_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 44871602 - 44871256
Alignment:
| Q |
1 |
aaaaactattaaaatggagaagaatttggagggttatggtagaagagggaaagtattgaagatgagtataatgaagaagaattcagagggttttggtaaa |
100 |
Q |
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| T |
44871602 |
aaaaactattaaaatggagaagaatttggagggttatggtagaagagggaaagtattgaagatgagtataatgaagaagaattcagagggttttggtaaa |
44871503 |
T |
|
| Q |
101 |
agagggaaggtattaaagaggggaggtataagggaaagttattccattg------ggttgatagagaataaagttttggtttcagggactcatgtgttct |
194 |
Q |
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| T |
44871502 |
agagggaaggtattaaagaggggaggtataagggaaagttattccattgtttcttggttgatagagaataaagttttggtttcaggaactcatgtgttct |
44871403 |
T |
|
| Q |
195 |
gtcgtggtagtgaaaatattgtcaaaagagggagtatattttctgatggtatagtttgtaactgttgtcgtgttaatttcaccgtcagtggatttgaggc |
294 |
Q |
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| T |
44871402 |
gtcgtggtagtgaaaatattgtcaaaagagggagtatattttctgatggtatagtttgtaactgttgtcgtgttaatttcaccgtcagtggatttgaggc |
44871303 |
T |
|
| Q |
295 |
tcatgctggttgtacaagacacagaccatccattagtatcttgttgg |
341 |
Q |
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| T |
44871302 |
tcatgctggttgtacaagacacagaccatccattagtatcttgttgg |
44871256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 13 - 341
Target Start/End: Original strand, 47522689 - 47523023
Alignment:
| Q |
13 |
aatggagaagaatttggagggttatggtagaagagggaaagtattgaagatgagtataatgaagaagaattcagagggttttggtaaaagagggaaggta |
112 |
Q |
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| T |
47522689 |
aatggagaagaattcagaggattgtggtagaagagggaaagtattaaagacaagtataatggagaaaaattcagaggcttctagtaagagagggaaggta |
47522788 |
T |
|
| Q |
113 |
ttaaagaggggaggtataagggaaagttattccattg------ggttgatagagaataaagttttggtttcagggactcatgtgttctgtcgtggtagtg |
206 |
Q |
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| T |
47522789 |
tcaaagacggaaggtaaaagagaaaggtattcactagtttcttggttgataaagaatcaagttttggtttcagggactaatgtattctgtcgtggtagaa |
47522888 |
T |
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| Q |
207 |
aaaatattgtcaaaagagggagtatattttctgatggtatagtttgtaactgttgtcgtgttaatttcaccgtcagtggatttgaggctcatgctggttg |
306 |
Q |
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| ||| |||||||||||||| || ||||||||||||| ||||||||| | ||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
47522889 |
acaatgttgtcaaaagagggggtttattttctgatggcatagtttgtgattgttgtcgtgttaatttcaatgtcactggatttgaggctcatgctggttg |
47522988 |
T |
|
| Q |
307 |
tacaagacacagaccatccattagtatcttgttgg |
341 |
Q |
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||||||||| |||||| ||| |||||||||||||| |
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| T |
47522989 |
tacaagacatagaccaaccactagtatcttgttgg |
47523023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 94 - 314
Target Start/End: Original strand, 47528280 - 47528506
Alignment:
| Q |
94 |
tggtaaaagagggaaggtattaaagaggggaggtataagggaaagttattccattg------ggttgatagagaataaagttttggtttcagggactcat |
187 |
Q |
| |
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||||||||||||||||||||||||||| | ||||||||||||||| ||||| ||| |||||||| |||||||||||||||||||||||||| || |
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| T |
47528280 |
tggtaaaagagggaaggtattaaagagagaaggtataagggaaaggtattcacttgtttcttggttgataaagaataaagttttggtttcagggactaat |
47528379 |
T |
|
| Q |
188 |
gtgttctgtcgtggtagtgaaaatattgtcaaaagagggagtatattttctgatggtatagtttgtaactgttgtcgtgttaatttcaccgtcagtggat |
287 |
Q |
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||| |||||||||||||| | ||| |||| | ||| |||||||||| || ||||||||| |||||| | |||||| |||||||||||| || ||||| |
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| T |
47528380 |
gtgctctgtcgtggtagtaacaatgttgttacaagcgggagtatatattgtgatggtattgtttgtgattgttgtaatgttaatttcactctcgctggat |
47528479 |
T |
|
| Q |
288 |
ttgaggctcatgctggttgtacaagac |
314 |
Q |
| |
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|| ||| |||||||||||||||||||| |
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| T |
47528480 |
ttaaggatcatgctggttgtacaagac |
47528506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 47522683 - 47522738
Alignment:
| Q |
64 |
gagtataatgaagaagaattcagagggttttggtaaaagagggaaggtattaaaga |
119 |
Q |
| |
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|||| ||||| ||||||||||||||| || ||||| ||||||||| |||||||||| |
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| T |
47522683 |
gagtttaatggagaagaattcagaggattgtggtagaagagggaaagtattaaaga |
47522738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 150 - 341
Target Start/End: Complemental strand, 9820639 - 9820448
Alignment:
| Q |
150 |
ggttgatagagaataaagttttggtttcagggactcatgtgttctgtcgtggtagtgaaaatattgtcaaaagagggagtatattttctgatggtatagt |
249 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||| |||||||||||| || ||| | || ||||||||||||| ||| | |||||||||| |||||| |
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| T |
9820639 |
ggttgataaagaatcaagttttggtttcagggactaatgtgttctgtcagggcagtaacaaagttgtcaaaagaggaagtttgttttctgatgctatagt |
9820540 |
T |
|
| Q |
250 |
ttgtaactgttgtcgtgttaatttcaccgtcagtggatttgaggctcatgctggttgtacaagacacagaccatccattagtatcttgttgg |
341 |
Q |
| |
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|||| | ||||||| ||||| || || ||| || || ||| |||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
9820539 |
ttgtgattgttgtcatgttacctttactatcaccgggttcgagtctcatgctggttgtacaagacatagaccatccactagtatcttgttgg |
9820448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 150 - 341
Target Start/End: Original strand, 9853341 - 9853532
Alignment:
| Q |
150 |
ggttgatagagaataaagttttggtttcagggactcatgtgttctgtcgtggtagtgaaaatattgtcaaaagagggagtatattttctgatggtatagt |
249 |
Q |
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| T |
9853341 |
ggttgataaagaatcaagttttggtttcagggactaatgtgttctgtcagggcagtaacaaagttgtcaaaagaggaagtttgttttctgatgctatagt |
9853440 |
T |
|
| Q |
250 |
ttgtaactgttgtcgtgttaatttcaccgtcagtggatttgaggctcatgctggttgtacaagacacagaccatccattagtatcttgttgg |
341 |
Q |
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| T |
9853441 |
ttgtgattgttgtcatgttacctttactatcaccgggttcgagtctcatgctggttgtacaagacatagaccatccactagtatcttgttgg |
9853532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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