View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20477_low_20 (Length: 318)
Name: NF20477_low_20
Description: NF20477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20477_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 52385842 - 52386128
Alignment:
| Q |
18 |
catgtggcaggttcccattcccaatcaacaaggaagaaggggtcaatccacaacatacaccgaaccaaagaggaagaagagaaagatgaagcgggaaagg |
117 |
Q |
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| T |
52385842 |
catgtggcaggttcccattcccaatcaacaaggaagaaggggtcaatccacaacatacaccgaaccaaagaggaagaagagaaagatgaagcgggaaagg |
52385941 |
T |
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| Q |
118 |
catatgtgaacagcaacatacagagtatgaataattcattgatggtgcaaggttcaataaatggaagagaccccggcgttcatgtcattcttcccgaaaa |
217 |
Q |
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| T |
52385942 |
catatgtgaacagcaacatacagagtatgaataattcattgatggtgcaaggttcaataaatggaagagaccccggcgttcatgtcattcttcccgaaaa |
52386041 |
T |
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| Q |
218 |
gcctgagcctcaagttaaacaaggtttggaaaaccgcaaagctgaagttaaaacagttagccgggtagagaggttaacttaccaacc |
304 |
Q |
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| T |
52386042 |
gcctgagcctcaagttaaacaaggtttggaaaaccgcgaagctgaagttaaaacagttagccgggtagagaggttaacttaccaacc |
52386128 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 7087813 - 7087895
Alignment:
| Q |
117 |
gcatatgtgaacagcaacatacagagtatgaataattcattgatggtgcaaggttcaataaatggaagagaccccggcgttca |
199 |
Q |
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| T |
7087813 |
gcatatgttaacagcaacatacaaagtatcaataattcactcatgtttcatggttcaatcaatgaaagagaccctggagttca |
7087895 |
T |
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