View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20477_low_21 (Length: 316)
Name: NF20477_low_21
Description: NF20477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20477_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 302
Target Start/End: Original strand, 4620751 - 4621045
Alignment:
| Q |
13 |
aatatgaagggaaaaaagcgaagctggaattgatgcgttgtgctacaaagcttcgtgcttctggggtaatgattcgcgctaaattaaatagcacaaatca |
112 |
Q |
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| T |
4620751 |
aatacgaagggaaaaaggcgaagctagaattattgcgctgtgctacaaagctccgtgcttctggggtaataattcgagctaaattaaatagcacaaatca |
4620850 |
T |
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| Q |
113 |
aaatcagcacaagttggttgatatgtttgattttgatataagttttagtgattctggagagttggatattccaccactatat-----ggaaacaactgaa |
207 |
Q |
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| T |
4620851 |
aaatcagcataagttggtggatatgtttgattttgatataagttttagtgattctggagagttggatattccaccactatatatcaaggaaacaactgaa |
4620950 |
T |
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| Q |
208 |
gtgaagtggaggaatttgattgcttgggagcaaagcaaaatttggattagatgcaaatacacttcttatgcacnnnnnnncaatggtttgatatg |
302 |
Q |
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| T |
4620951 |
gttaagtggaggaatttgattgcttgggagcaaagcaaaatttggattagatgcaaatgcacttcttatgcactttttttcaatggtttgatatg |
4621045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 14 - 280
Target Start/End: Original strand, 4591217 - 4591491
Alignment:
| Q |
14 |
atatgaagggaaaaaagcgaagctggaattgatgcgttgtgctacaaagcttcgtgcttctggggtaatgattcgcgct---aaattaaatagcacaaat |
110 |
Q |
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| T |
4591217 |
atatgaaggaaaaaaagcaaagctagaattgttatattgtgctacaaagcttcgtgcttctggggtaacgattcgagctgctaaattaaatatcacaaat |
4591316 |
T |
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| Q |
111 |
caaaatcagcacaagttggttgatatgtttgattttgatataagttttagtgattctggagagttggatattccaccactatat-----ggaaacaactg |
205 |
Q |
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| T |
4591317 |
caaaatcaacatgagttggtggatatatttgattttgatataagttttagtgattagggagagttgaatattccgccgctatatattaaagaaacaacgg |
4591416 |
T |
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| Q |
206 |
aagtgaagtggaggaatttgattgcttgggagcaaagcaaaatttggattagatgcaaatacacttcttatgcac |
280 |
Q |
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| T |
4591417 |
aagtgaagtggaggaatttgattgcttgggagcaaagcaaaaattggattagatgcaaatacacatcctatgcac |
4591491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 280
Target Start/End: Original strand, 4554926 - 4555190
Alignment:
| Q |
17 |
tgaagggaaaaaagcgaagctggaattgatgcgttgtgctacaaagcttcgtgcttctggggtaatgattcgcgctaaattaaatagcacaaatcaaaat |
116 |
Q |
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| T |
4554926 |
tgaagggaaaaaggcgaagctagaattactgtgttgtgctacaaagcttcatact----gtgttatgattcgagctaaattaaatagcacaaatcaatct |
4555021 |
T |
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| Q |
117 |
cagcacaagttggttgatatgtttgattttgatataagttttagtgattctggagagttggatattccaccactatat-----ggaaacaactgaagtga |
211 |
Q |
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| T |
4555022 |
caacagaagttggtggatatgtttgattttgatgtgagttttagtgattttggggagttgataatttcaccactatatattaaggaaagaacggaagtga |
4555121 |
T |
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| Q |
212 |
agtggaggaatttgattgcttgggagcaaagcaaaatttggattagatgcaaatacacttcttatgcac |
280 |
Q |
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| T |
4555122 |
agtggaggaatttgattgcttgggagcaaagcaaaatttggagtaaatgcaaatacacttcctatgcac |
4555190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 14193210 - 14193281
Alignment:
| Q |
195 |
ggaaacaactgaagtgaagtggaggaatttgattgcttgggagcaaagcaaaatttggattagatgcaaata |
266 |
Q |
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| T |
14193210 |
ggaaacaacggaagtgaggtggaggaatttgattgcttgggagcagagcaaaattaacattagatgcaaata |
14193281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 278
Target Start/End: Original strand, 18521903 - 18521986
Alignment:
| Q |
195 |
ggaaacaactgaagtgaagtggaggaatttgattgcttgggagcaaagcaaaatttggattagatgcaaatacacttcttatgc |
278 |
Q |
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| T |
18521903 |
ggaaacaacggaagtgaagtggaggaatttgattgcttgggaacagaatagaatttgggtaagatgcaaatacacttcatatgc |
18521986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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