View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20477_low_22 (Length: 314)
Name: NF20477_low_22
Description: NF20477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20477_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 935351 - 935649
Alignment:
| Q |
1 |
caagagcttgaagcctttccaaggattgaaattcactgaatgcaaccttaaccatttgtttcacagcacatgtggcaatccctttaccccaatatttaga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
935351 |
caagagcttgaagcctttccaaggattgaaattcactgaatgcaaccttaaccatttgtttcacagcacatgtggcaatccctttaccccaatatttaga |
935450 |
T |
|
| Q |
101 |
ggctagaacatacccaatttctgcacatctgttcctactcttgtcataaagtgaactggaggacaacttaatacacccaatagcatgatcgttatggcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
935451 |
ggctagaacatacccaatttctgcacatctgttcctactcttgtcataaagtgaactggaggacaacttaatacacccaatagcatgatcgttatggcat |
935550 |
T |
|
| Q |
201 |
attgctttgcaacgtagatacttgcctgccatatttttgatgaagttgatgccttggtctttgctggtgtaaggttccccccagaacttggccactttt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
935551 |
attgctttgcaacgtagatacttgcctgccatatttttgatgaagttgatgccttggtctttgctggtgtaaggttccccccagaacttggccactttt |
935649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 925889 - 926196
Alignment:
| Q |
1 |
caagagcttgaagcctttccaaggattgaaattcactgaatgcaa------ccttaaccatttgtttcacagcacatgtggcaatccctttaccccaata |
94 |
Q |
| |
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||||||||| |||||||||||| || ||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
925889 |
caagagcttcaagcctttccaaatatgaaaattcactgaatgcaaatgtaaccataaccatttgtttcacagcacacgtggcaatccctttaccccagta |
925988 |
T |
|
| Q |
95 |
tttagaggctagaacatacccaatttctgcacatctgttcctactcttgtcataaagtgaactggaggacaacttaatacacccaatagcatgatcgtta |
194 |
Q |
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|||||||||||||||||| ||||||||||||||| ||| ||| ||||| |||| ||||||||| ||| |||||||||||||||||||| ||||||| ||| |
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| T |
925989 |
tttagaggctagaacataaccaatttctgcacatttgtacctgctcttatcatgaagtgaactcgagaacaacttaatacacccaataacatgatcatta |
926088 |
T |
|
| Q |
195 |
tggcatattgctttgca---acgtagatacttgcctgccatatttttgatgaagttgatgccttggtctttgctggtgtaaggttccccccagaacttgg |
291 |
Q |
| |
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||||||||||||||||| ||||||| | | | | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
926089 |
tggcatattgctttgcattgtagtagatattcactttctatattttcaatgaagttgatgccttggtctttgctggtgtaaggttccccccagaacttgg |
926188 |
T |
|
| Q |
292 |
ccactttt |
299 |
Q |
| |
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|||||||| |
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| T |
926189 |
ccactttt |
926196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 923860 - 923995
Alignment:
| Q |
1 |
caagagcttgaagcctttccaaggattgaaattcactgaatgcaaccttaaccatttgtttcacagcacatgtggcaatccctttaccccaatatttaga |
100 |
Q |
| |
|
||||||||| ||||||||||||| | || |||| ||||||||||||||||| |||||||||| |||| ||||||| ||||||||||||||||||||| |
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| T |
923860 |
caagagcttcaagcctttccaagtaagacaactcacagaatgcaaccttaaccacttgtttcacaacacaagtggcaacccctttaccccaatatttaga |
923959 |
T |
|
| Q |
101 |
ggctagaacatacccaatttctgcacatctgttcct |
136 |
Q |
| |
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| |||||||||| |||| |||||||||| ||||||| |
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|
| T |
923960 |
gcctagaacatagccaagttctgcacatttgttcct |
923995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 33 - 299
Target Start/End: Original strand, 939172 - 939441
Alignment:
| Q |
33 |
tcactgaatgcaaccttaaccatttgtttcacagcacatgtggcaatccctttaccccaatatttagaggctagaacatacccaatttctgcacatctgt |
132 |
Q |
| |
|
|||||||||||||||||||| | |||||||||| || | ||||| || ||||||||||| |||||||||||||||||||| ||| ||||||| | ||| |
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| T |
939172 |
tcactgaatgcaaccttaactacttgtttcacaacatacgtggctattcctttaccccagtatttagaggctagaacataggcaagttctgcagttttgt |
939271 |
T |
|
| Q |
133 |
tcctactcttgtcataaagtgaactggaggacaacttaatacacccaatagcatgatcgttatggcatattgctttgcaacgtagatacttgcctgccat |
232 |
Q |
| |
|
|||| || || |||| | |||| || || || || || ||||||||| ||| |||| |||||||||||||||| | |||| ||||| || || |
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| T |
939272 |
tcctgcttttatcatgaggtgatcttgatttcagagaaacacggccaatagcacgattgttaaggcatattgctttgcaccatagaaacttgtttggtat |
939371 |
T |
|
| Q |
233 |
atttttgatgaagttgatgccttggtctttgctggtgtaaggttccc---cccagaacttggccactttt |
299 |
Q |
| |
|
||||| |||||| |||||||||| |||||||||||||| ||||||| |||||||||||||||||| |
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| T |
939372 |
attttcaatgaagctgatgccttgttctttgctggtgtatggttcccaagagcagaacttggccactttt |
939441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 940182 - 940308
Alignment:
| Q |
11 |
aagcctttccaaggattgaaattcactgaatgcaaccttaaccatttgtttcacagcacatgtggcaatccctttac-cccaatatttagaggctagaac |
109 |
Q |
| |
|
||||||||||| | | |||| |||||||||||||||||||| | |||||||||||||||||||| ||||||||||| ||||||||||| || ||||||| |
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| T |
940182 |
aagcctttccatgtgtggaaactcactgaatgcaaccttaactacttgtttcacagcacatgtggaaatccctttacacccaatatttatagcctagaac |
940281 |
T |
|
| Q |
110 |
atacccaatttctgcacatctgttcct |
136 |
Q |
| |
|
||| |||| |||| ||||| ||||||| |
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|
| T |
940282 |
atagccaagttctacacatttgttcct |
940308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 928221 - 928321
Alignment:
| Q |
1 |
caagagcttgaagcctttccaaggattgaaattcactgaatgcaaccttaaccatttgtttcacagcacatgtggcaatccctttaccccaatatttaga |
100 |
Q |
| |
|
||||||||| ||||||||||||| | ||||||| |||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
928221 |
caagagcttcaagcctttccaagtacgaaaattcatcgaatgcaatcttaacaatttgtttcacagcacatgtgacaatccctttaccccaatatttaga |
928320 |
T |
|
| Q |
101 |
g |
101 |
Q |
| |
|
| |
|
|
| T |
928321 |
g |
928321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 279
Target Start/End: Original strand, 928387 - 928493
Alignment:
| Q |
173 |
acacccaatagcatgatcgttatggcatattgctttgcaacgtagatacttgcctgccatatttttgatgaagttgatgccttggtctttgctggtgtaa |
272 |
Q |
| |
|
||| ||||||||| |||| ||| ||||||||||||||||| ||| |||||| | | ||| ||| |||||||||||||| | ||| ||||||||||| |
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|
| T |
928387 |
acagccaatagcacgatcattaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatgccatcttctctgctggtgtaa |
928486 |
T |
|
| Q |
273 |
ggttccc |
279 |
Q |
| |
|
||||||| |
|
|
| T |
928487 |
ggttccc |
928493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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