View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20477_low_23 (Length: 314)
Name: NF20477_low_23
Description: NF20477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20477_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 32389440 - 32389143
Alignment:
| Q |
1 |
tgcactagtgtaggacaatcattgttatgcaatgcttaaggttctttccaagtagtctttaagtgtgatgggtcaatcggcgaggggtgacagagggata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32389440 |
tgcactagtgtaggacaatcattgttatgcaatgcttaaggttctttccaagtagtctttaagtgtgatgggtcaatcggcgaggggtgacagagggata |
32389341 |
T |
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| Q |
101 |
tgttactcgatagttcgtccttgtgttggaacaggttcctcttatacccttctttaccatcattatgggttttgttagcattgctaaaattctaaaggac |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32389340 |
tgttactcgatagttcgtccttgtgttgtaacaggttt-tcttatacccttctttaccatcattatgggttttgttagcattgctaaaattctgaaggac |
32389242 |
T |
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| Q |
201 |
tttatgcttttgacttgctttgattgagttatttttcttgtcagtgtctcccttgggttttgctgtagttgttaggattttgtcctcctttttattgag |
299 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32389241 |
tttatgcttttgacctgctttgattgagttatttttcttgtcagtgtctcccttgggttttgctgtagttgttaggattttgtcctcctttttattgag |
32389143 |
T |
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